Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RCF73_RS05915 Genome accession   NZ_CP133240
Coordinates   1170817..1173198 (+) Length   793 a.a.
NCBI ID   WP_419791494.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain CCM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165817..1178198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCF73_RS05890 (RCF73_05855) - 1166427..1166582 (+) 156 WP_165806095.1 hypothetical protein -
  RCF73_RS05895 (RCF73_05860) - 1166627..1167640 (-) 1014 WP_037574175.1 LLM class flavin-dependent oxidoreductase -
  RCF73_RS05900 (RCF73_05865) - 1167860..1169008 (+) 1149 WP_037574172.1 cysteine desulfurase family protein -
  RCF73_RS05905 (RCF73_05870) mnmA 1169005..1170117 (+) 1113 WP_419791493.1 tRNA 2-thiouridine(34) synthase MnmA -
  RCF73_RS05910 (RCF73_05875) - 1170140..1170814 (+) 675 WP_103159036.1 tetratricopeptide repeat protein -
  RCF73_RS05915 (RCF73_05880) recD2 1170817..1173198 (+) 2382 WP_419791494.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RCF73_RS05920 (RCF73_05885) alaS 1173424..1176054 (+) 2631 WP_419791495.1 alanine--tRNA ligase -
  RCF73_RS05925 (RCF73_05890) - 1176116..1176388 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  RCF73_RS05930 (RCF73_05895) ruvX 1176381..1176809 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  RCF73_RS05935 (RCF73_05900) - 1176824..1177138 (+) 315 WP_419791496.1 DUF1292 domain-containing protein -
  RCF73_RS05940 (RCF73_05905) - 1177519..1178163 (+) 645 WP_037574145.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89548.81 Da        Isoelectric Point: 4.6242

>NTDB_id=872685 RCF73_RS05915 WP_419791494.1 1170817..1173198(+) (recD2) [Staphylococcus chromogenes strain CCM]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSGLFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEDTCIKQG
HTYLPKETLVTESLQLLSKNSQVPIDTTLIEEVLTQLVEENRLVDDHENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQTNSVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALLGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGIF
WAKENALNKDVVVVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNVEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=872685 RCF73_RS05915 WP_419791494.1 1170817..1173198(+) (recD2) [Staphylococcus chromogenes strain CCM]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGGAATATTGATGTCATTTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACGTTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGGGCTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTACCCAAATTGTCAAAAACAAAGCAATCGCAAATCGCAGACCAAGTTTTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGACACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATTGACAC
CACTTTAATTGAAGAAGTGTTAACTCAACTTGTAGAAGAAAACCGTCTCGTTGATGATCACGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTACACCTCGAAGTGTTTGAT
CAATCGGATATTCAGATGCATATTGGTGAAATCGAGCAAACAAATAGTGTGTCATATGCCGAGGCACAAAAAGAGGCGTT
AGAAGCCGCTATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACTCGGGATTTCTTTAGATTACGATGACTATACCGAAGAAGATTATCCTATTGTTTTAGCA
GCACCGACGGGTCGGGCTTCGAAACGACTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTAATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCTGCCAAACTTATTATTATAGATGAAATGTCAATGG
TCGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCTGTTGGGCCTGGGCAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAGGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTACGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGCTATGATATGTCTGATATACAAGTATTAGCTCCGATGTACCGAGGAAATGCAGGGATTCATCGATTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGCGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGATAAGGTATTACAACTTGTCAATCGTCCGAATGACAATGTATTTAATGGCGACATCGGAGTTATTGTAGGTATTTTT
TGGGCTAAGGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGACTATGAAGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATAGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACGATTTTTTAGAAATTGACAACGTTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.112

99.369

0.488