Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RBU59_RS07730 Genome accession   NZ_CP133190
Coordinates   1710554..1712371 (-) Length   605 a.a.
NCBI ID   WP_308148558.1    Uniprot ID   A0AA51HI84
Organism   Anaerocolumna sp. MB42-C2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705554..1717371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBU59_RS07705 (RBU59_07705) - 1707230..1707994 (+) 765 WP_308147297.1 MerR family transcriptional regulator -
  RBU59_RS07710 (RBU59_07710) - 1708136..1708732 (-) 597 WP_308147298.1 DJ-1/PfpI family protein -
  RBU59_RS07715 (RBU59_07715) - 1709049..1709615 (+) 567 WP_308147299.1 chromate transporter -
  RBU59_RS07720 (RBU59_07720) - 1709649..1710221 (+) 573 WP_308147300.1 chromate transporter -
  RBU59_RS07725 (RBU59_07725) - 1710226..1710396 (-) 171 WP_308147301.1 hypothetical protein -
  RBU59_RS07730 (RBU59_07730) rcrQ 1710554..1712371 (-) 1818 WP_308148558.1 ABC transporter ATP-binding protein Regulator
  RBU59_RS07735 (RBU59_07735) - 1712409..1714664 (-) 2256 WP_308147302.1 ABC transporter ATP-binding protein -
  RBU59_RS07740 (RBU59_07740) - 1714701..1715195 (-) 495 WP_308147303.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67324.80 Da        Isoelectric Point: 6.5877

>NTDB_id=872394 RBU59_RS07730 WP_308148558.1 1710554..1712371(-) (rcrQ) [Anaerocolumna sp. MB42-C2]
MGRGPMGGGQLGAAGEKAKNFKESIKKLAIFMSRYKIGFLFVVIFAIGSTVFGIVGPKILGNVTTDLFEGLMNKINRTGG
IDFSSIGRTLLILLSLYVISMLFSFIQGFIMTDISQKVTYQFRKEISEKINRMPMNYFETKTHGEVLSRVTNDVDTLSQS
LNQSITQIITSVTMIIGILYMMLTISFTMTLVAVLTLPLSAGLIGYIIKKSQIYFKQQQEYLGHVNGQVEEVYGGHNIVK
AFNGEDKVIEDFDKANNTLYHSAWKSQFLSGMMHPIMAFVGNIGYVAVAILGGYLVVKDRIKVGDIQSFIQYVRSFNQPI
AQIAQVSAQIQQTAAAAERVFEFLEEEEEQIAVNPVQTENISSNVEFNHVKFGYNPDKIIIKDFSAQIKPGQKIAIVGPT
GAGKTTMVKLLMRFYDVNEGEILIDGFNIKDFNRGELRQLFGMVLQETWLFNGTIMENIRYGKSGATDEEVIAAAKAAHA
HHFISTLPDGYNMVLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEIRIQKAMDNLMKGRTSFVIAHRL
STIRDADLILVMKDGDIVEQGNHEELLLKDGFYASLYNSQFEQTA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=872394 RBU59_RS07730 WP_308148558.1 1710554..1712371(-) (rcrQ) [Anaerocolumna sp. MB42-C2]
ATGGGACGCGGACCTATGGGAGGCGGCCAATTGGGTGCTGCAGGTGAGAAAGCAAAGAATTTTAAGGAGTCCATTAAAAA
ATTGGCAATATTTATGAGCCGATATAAAATAGGGTTTTTGTTTGTAGTTATATTTGCTATCGGCAGTACAGTATTTGGTA
TTGTAGGCCCTAAAATACTTGGTAATGTAACTACGGATTTGTTTGAAGGACTGATGAATAAAATTAATAGAACCGGTGGT
ATTGATTTTAGCAGTATCGGAAGAACTCTTTTAATACTATTAAGTTTGTATGTAATCAGTATGTTGTTTTCATTTATACA
GGGCTTTATCATGACTGACATTTCACAGAAAGTTACTTATCAGTTCAGAAAAGAGATTTCTGAGAAAATCAACCGGATGC
CGATGAATTATTTTGAAACAAAAACGCATGGTGAAGTGCTATCCAGAGTTACCAATGATGTGGATACATTAAGTCAGAGT
TTAAATCAGAGTATTACGCAAATCATTACATCGGTTACTATGATTATCGGTATTTTATACATGATGCTGACCATTAGTTT
TACCATGACATTGGTTGCTGTTCTTACGTTACCTTTATCAGCAGGACTTATTGGATATATTATTAAAAAATCGCAGATTT
ACTTTAAACAGCAGCAGGAATATTTAGGTCATGTAAACGGTCAGGTGGAAGAAGTTTATGGCGGTCATAATATAGTGAAA
GCATTTAATGGCGAAGATAAAGTAATTGAAGATTTTGATAAGGCAAATAATACACTTTATCATTCAGCCTGGAAGTCTCA
ATTTCTCTCCGGAATGATGCATCCAATTATGGCTTTTGTAGGTAATATCGGTTATGTAGCTGTAGCTATCTTAGGTGGAT
ATCTGGTAGTGAAAGACCGGATTAAAGTCGGTGATATTCAATCGTTTATACAATATGTAAGAAGTTTTAACCAGCCGATT
GCACAAATTGCGCAAGTTTCGGCACAAATACAGCAAACCGCAGCGGCAGCGGAACGCGTATTTGAATTTTTAGAAGAAGA
GGAAGAACAGATAGCAGTTAATCCGGTACAGACGGAGAATATAAGCAGTAATGTTGAATTTAACCATGTTAAGTTTGGTT
ATAATCCTGATAAGATTATTATTAAAGATTTCTCTGCACAAATTAAACCGGGTCAGAAAATAGCTATCGTTGGACCAACC
GGTGCTGGTAAAACGACAATGGTTAAGCTATTAATGCGTTTTTATGACGTGAATGAAGGTGAAATCTTAATCGATGGTTT
TAACATCAAAGATTTTAACCGGGGTGAATTAAGACAGCTGTTTGGTATGGTTTTACAGGAAACCTGGTTATTTAACGGTA
CAATTATGGAAAATATCCGGTACGGCAAAAGCGGTGCTACGGATGAAGAAGTTATAGCGGCAGCGAAAGCAGCTCATGCA
CATCATTTTATATCCACTCTTCCGGATGGTTACAATATGGTTTTAAATGAAGAAGCAAGTAATGTTTCGCAAGGCCAAAA
ACAGTTATTAACCATAGCAAGAGCTATTTTGGCGGATCCTAAGATTCTGATCTTAGATGAAGCAACCAGTTCCGTAGATA
CCCGAACAGAAATAAGAATCCAGAAAGCAATGGATAACTTAATGAAAGGCAGAACAAGTTTTGTTATTGCACACAGACTT
TCAACGATTCGAGATGCGGATTTAATACTTGTTATGAAAGACGGAGATATTGTAGAACAGGGGAATCATGAAGAACTTCT
TCTAAAAGATGGATTTTATGCAAGTCTTTATAATTCCCAGTTTGAACAGACAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-319)

ABC transporter (ABC_tran)

(382-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.286

96.364

0.494