Detailed information NTG0872298

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RB649_RS08820
• Genome accession: NZ_CP133179
• Coordinates: 1634386..1635450 (+)
• Length: 354 a.a.
• NCBI ID: WP_011174079.1
• Uniprot ID: Q72GY2
• Organism: Thermus thermophilus HB27
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1629386..1640450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB649_RS08800 (RB649_08800)	-	1629894..1630676 (+)	783	WP_011174075.1	RNA methyltransferase	-
RB649_RS08805 (RB649_08805)	groES	1630774..1631079 (+)	306	WP_011174076.1	co-chaperone GroES	-
RB649_RS08810 (RB649_08810)	groL	1631092..1632723 (+)	1632	WP_011174077.1	chaperonin GroEL	-
RB649_RS08815 (RB649_08815)	-	1632787..1634319 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
RB649_RS08820 (RB649_08820)	pilD	1634386..1635450 (+)	1065	WP_011174079.1	A24 family peptidase	Machinery gene
RB649_RS08825 (RB649_08825)	-	1635487..1635990 (+)	504	WP_011174080.1	DUF2939 domain-containing protein	-
RB649_RS08830 (RB649_08830)	-	1636004..1636924 (+)	921	WP_011174081.1	nitroreductase family protein	-
RB649_RS08835 (RB649_08835)	-	1636878..1637675 (-)	798	WP_011174082.1	C40 family peptidase	-
RB649_RS08840 (RB649_08840)	-	1637676..1638434 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
RB649_RS08845 (RB649_08845)	recF	1638419..1639450 (-)	1032	WP_011174084.1	DNA replication/repair protein RecF	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37885.22 Da
• Isoelectric Point: 8.1123

>NTDB_id=872298 RB649_RS08820 WP_011174079.1 1634386..1635450(+) (pilD) [Thermus thermophilus HB27]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRPVVLPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLR
QRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1065 bp

>NTDB_id=872298 RB649_RS08820 WP_011174079.1 1634386..1635450(+) (pilD) [Thermus thermophilus HB27]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGCCCGTGGTCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTGGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCCGCCGGGGGCCTGGCCCTCGCCGGGGGGCTCTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGAAGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTCTTGGGGGCCCTCG
GGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTCCTTAGG
CAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTGGGGGGC
GTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-317)

3D structure

• AlphaFold DB: Q72GY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.648	100	0.483