Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   Q9Q86_RS04670 Genome accession   NZ_CP133162
Coordinates   926015..926743 (+) Length   242 a.a.
NCBI ID   WP_227540303.1    Uniprot ID   -
Organism   Acinetobacter sp. A22     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 921015..931743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9Q86_RS04635 kdsB 921206..921967 (+) 762 WP_004911526.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q9Q86_RS04640 - 921969..922958 (+) 990 WP_112986427.1 DNA polymerase III subunit delta' -
  Q9Q86_RS04645 - 923183..923527 (+) 345 WP_004911520.1 PilZ domain-containing protein -
  Q9Q86_RS04650 - 923550..924323 (+) 774 WP_112986426.1 TatD family hydrolase -
  Q9Q86_RS04655 - 924362..924970 (+) 609 WP_168153910.1 TetR/AcrR family transcriptional regulator -
  Q9Q86_RS04660 - 924983..925531 (+) 549 WP_112986424.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q9Q86_RS04665 xcpV 925665..926018 (+) 354 WP_051067837.1 type II secretion system protein Machinery gene
  Q9Q86_RS04670 xcpW 926015..926743 (+) 729 WP_227540303.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q9Q86_RS04675 gspK 926740..927699 (+) 960 WP_112986422.1 type II secretion system minor pseudopilin GspK -
  Q9Q86_RS04680 - 927806..928402 (+) 597 WP_004954093.1 6-carboxytetrahydropterin synthase -
  Q9Q86_RS04685 ung 928441..929154 (+) 714 WP_004911491.1 uracil-DNA glycosylase -
  Q9Q86_RS04690 - 929151..930275 (+) 1125 WP_171293853.1 enoyl-CoA hydratase/isomerase family protein -
  Q9Q86_RS04695 tadA 930282..930785 (+) 504 WP_087539688.1 tRNA adenosine(34) deaminase TadA -
  Q9Q86_RS04700 - 930852..931292 (+) 441 WP_075696895.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27844.09 Da        Isoelectric Point: 8.8298

>NTDB_id=872189 Q9Q86_RS04670 WP_227540303.1 926015..926743(+) (xcpW) [Acinetobacter sp. A22]
MKIKNVVMRLGCRFNVVSECQQSSTKSYLPNKIKSNLGFTLVELLVAIAIFAVLSMLGWKVFDYLIKVKDRNAEHETHLF
ELQDAYQQFLKDSMQIIPLTANDGRQLQAAMVLNDRSFSFSKAGVSDPLKQGLSPYERIEYRYDAQQKKVYRLKYTNLNI
PNRVQPVSSTLLENVDQFRILILNPQEISQWPENINDPNNVNELKKLPLGFKVQLTIAGSDYEWIYSLLNANQLLVNQET
PP

Nucleotide


Download         Length: 729 bp        

>NTDB_id=872189 Q9Q86_RS04670 WP_227540303.1 926015..926743(+) (xcpW) [Acinetobacter sp. A22]
ATGAAAATCAAGAATGTTGTAATGAGGTTGGGTTGCAGATTTAATGTTGTCTCAGAGTGTCAGCAAAGTTCAACTAAGTC
TTATTTACCAAATAAAATTAAGAGTAATTTAGGTTTTACTTTAGTTGAGTTGCTTGTTGCGATTGCGATTTTTGCAGTGC
TTTCAATGTTAGGGTGGAAAGTTTTTGATTATCTCATCAAAGTGAAAGATAGAAATGCAGAACATGAAACACACTTATTT
GAATTACAGGATGCTTATCAGCAATTTTTAAAAGATAGCATGCAGATAATTCCATTGACTGCAAATGATGGGCGACAATT
ACAAGCAGCTATGGTTTTGAATGATCGAAGTTTTAGTTTTAGTAAGGCTGGGGTATCTGATCCATTGAAGCAAGGTCTTT
CACCATATGAGCGAATAGAATACAGATATGATGCACAACAAAAAAAAGTTTACCGTTTGAAATATACAAATTTAAATATT
CCAAATCGTGTGCAACCAGTATCAAGCACTTTACTTGAAAATGTAGATCAATTTAGAATTTTGATTTTAAATCCACAAGA
AATTAGCCAATGGCCTGAAAATATTAATGATCCAAATAATGTAAATGAATTAAAGAAGTTACCATTAGGTTTTAAAGTTC
AATTGACGATTGCTGGTTCAGATTATGAGTGGATTTATAGTTTATTAAATGCCAATCAGTTATTGGTCAATCAGGAAACT
CCACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(34-57)

Type II secretion system (T2SS), protein J (T2SSJ)

(91-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.506

98.76

0.607