Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RBG61_RS08325 Genome accession   NZ_CP133133
Coordinates   1725313..1727172 (-) Length   619 a.a.
NCBI ID   WP_307942554.1    Uniprot ID   -
Organism   Paludicola sp. MB14-C6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1720313..1732172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBG61_RS08300 (RBG61_08300) - 1721157..1722035 (+) 879 WP_307942546.1 RluA family pseudouridine synthase -
  RBG61_RS08305 (RBG61_08305) - 1722149..1722910 (+) 762 WP_307942548.1 transporter substrate-binding domain-containing protein -
  RBG61_RS08310 (RBG61_08310) - 1722989..1723675 (+) 687 WP_307942549.1 amino acid ABC transporter permease -
  RBG61_RS08315 (RBG61_08315) - 1723662..1724384 (+) 723 WP_307942551.1 amino acid ABC transporter ATP-binding protein -
  RBG61_RS08320 (RBG61_08320) - 1724577..1725269 (+) 693 WP_307942553.1 helix-turn-helix domain-containing protein -
  RBG61_RS08325 (RBG61_08325) rcrQ 1725313..1727172 (-) 1860 WP_307942554.1 ABC transporter ATP-binding protein Regulator
  RBG61_RS08330 (RBG61_08330) - 1727165..1729396 (-) 2232 WP_307942557.1 ABC transporter ATP-binding protein -
  RBG61_RS08335 (RBG61_08335) - 1729450..1729911 (-) 462 WP_307942559.1 MarR family transcriptional regulator -
  RBG61_RS08340 (RBG61_08340) proS 1730236..1731675 (+) 1440 WP_307942560.1 proline--tRNA ligase -
  RBG61_RS08345 (RBG61_08345) - 1731762..1732055 (+) 294 WP_307942562.1 DUF3795 domain-containing protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68750.60 Da        Isoelectric Point: 6.6762

>NTDB_id=872057 RBG61_RS08325 WP_307942554.1 1725313..1727172(-) (rcrQ) [Paludicola sp. MB14-C6]
MSNAKQPKRGPMGGMGGPMGAMSGEKAKNFKGTMKSLISHLAQYKLSILLVVIFAIGSAAFAIIGPKILGNATTEIFNGL
IEKIKGQGGGINFTKIGTILLFLLGLYIISAVFSFLQGYFMTNVTQKVSYNFRKEISEKINRMPLKYFESRTHGEVLSRV
TNDIDTLSQSLNQSMTQVISSITLIIGVLIMMFSISWQMTLVALLILPLSMLLITGVVKRSQKYFKSQQEYLGHVNGQVE
EVFGGLNIVKAFNGEEKVTNEFDKMNETLYQSAWKSQFLSGMMMPVMTFVGNLGYVAVSILGGYLVIKNTIQVGDIQSFI
QYIRSFTQPIAQVAQVANLLQSTAAAAERVFEFLNEEEEDQFVENPVHIDKLEGNVAFKAVHFGYDPEKIIINDFSATVK
QGQKVAIVGPTGAGKTTMIKLLMRFYDVNSGAILIDGHDIRDFNRTELRDMFGMVLQDTWLFNDTIMENIRYGRLNATDE
EVIAAAKAAHVDHFIKTLPKGYQMELNEEASNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEIRIQKAMDNLMS
GRTSFVIAHRLSTIRDADLILVMKDGDIIEQGNHEELISANGFYANLYNSQFERTEAIA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=872057 RBG61_RS08325 WP_307942554.1 1725313..1727172(-) (rcrQ) [Paludicola sp. MB14-C6]
ATGAGTAATGCAAAACAACCAAAGCGTGGCCCTATGGGCGGCATGGGCGGCCCTATGGGCGCTATGAGCGGCGAAAAAGC
AAAAAACTTTAAAGGCACAATGAAAAGCTTGATTTCTCATCTTGCTCAATATAAATTATCTATTTTGCTTGTTGTTATTT
TTGCAATTGGAAGTGCTGCTTTCGCAATAATTGGTCCAAAAATTTTAGGTAATGCAACCACTGAAATTTTCAATGGTTTG
ATTGAAAAAATTAAAGGGCAAGGTGGAGGAATTAACTTTACAAAAATCGGAACCATCCTTTTATTCTTACTTGGACTATA
TATTATCAGTGCAGTATTTTCTTTTCTTCAAGGTTATTTCATGACTAACGTAACGCAAAAGGTTTCTTATAATTTTAGAA
AAGAAATTTCCGAAAAAATCAATCGTATGCCATTAAAATATTTTGAAAGCAGAACACATGGTGAAGTGTTATCAAGAGTG
ACAAACGATATTGATACTTTAAGCCAAAGCTTAAACCAAAGTATGACTCAAGTTATTTCATCCATTACTTTAATCATTGG
TGTACTGATAATGATGTTTTCTATCAGCTGGCAAATGACTTTAGTTGCGCTTTTGATTCTTCCATTATCCATGCTTTTGA
TTACTGGCGTTGTCAAACGTTCACAAAAATACTTTAAATCACAACAAGAATATCTTGGTCATGTAAATGGTCAAGTTGAA
GAAGTATTCGGTGGATTAAACATTGTAAAAGCATTTAATGGAGAAGAAAAGGTTACAAATGAATTTGATAAAATGAATGA
AACACTTTATCAATCTGCTTGGAAATCTCAATTTTTATCCGGAATGATGATGCCTGTTATGACGTTTGTTGGTAACCTAG
GCTATGTTGCAGTGTCCATTCTTGGTGGATACCTTGTAATCAAAAACACCATTCAAGTTGGTGATATTCAATCCTTTATT
CAATATATCCGCAGCTTTACCCAACCAATTGCTCAAGTGGCTCAAGTCGCTAATCTACTACAATCTACCGCTGCAGCTGC
AGAACGTGTATTTGAATTTTTGAACGAGGAAGAAGAAGATCAATTTGTTGAAAATCCAGTTCATATTGATAAACTAGAAG
GCAATGTTGCTTTCAAGGCTGTTCATTTTGGCTATGATCCAGAAAAAATTATTATCAACGACTTTAGCGCTACTGTAAAA
CAAGGACAAAAAGTAGCTATAGTTGGGCCTACAGGAGCAGGTAAAACAACTATGATTAAACTGCTTATGCGTTTTTATGA
TGTGAATAGTGGCGCAATCTTAATAGACGGCCACGATATTCGCGATTTTAACCGCACTGAACTACGAGATATGTTTGGTA
TGGTATTACAGGATACTTGGTTATTTAACGATACGATTATGGAAAACATTCGTTATGGCAGATTAAATGCAACTGACGAA
GAAGTAATTGCAGCTGCAAAAGCGGCTCATGTTGACCATTTTATCAAGACACTTCCAAAAGGCTATCAAATGGAGTTAAA
TGAAGAGGCAAGCAACATTTCACAAGGACAAAAGCAGTTGCTTACCATTGCTAGAGCCATTCTTGCTGACCCTAAGATTT
TGATTTTAGACGAAGCAACAAGCTCTGTTGATACCCGAACAGAAATCCGTATTCAAAAAGCTATGGATAATCTAATGAGC
GGAAGAACCAGCTTTGTTATTGCTCATAGGCTTTCAACCATTCGTGACGCCGATTTAATCTTAGTTATGAAAGATGGCGA
TATCATCGAGCAAGGTAACCATGAAGAGCTTATTTCGGCAAATGGATTCTATGCAAATCTATATAATTCTCAATTTGAAC
GAACCGAAGCAATTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-541)

ABC transporter transmembrane region (ABC_membrane)

(49-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.462

95.153

0.499