Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RBH91_RS15455 Genome accession   NZ_CP133085
Coordinates   3122276..3124636 (-) Length   786 a.a.
NCBI ID   WP_307892136.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3117276..3129636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS15435 - 3117336..3118907 (+) 1572 WP_076763391.1 SH3 domain-containing protein -
  RBH91_RS15440 dtd 3118934..3119377 (-) 444 WP_307892134.1 D-aminoacyl-tRNA deacylase -
  RBH91_RS15445 - 3119391..3121592 (-) 2202 WP_307892135.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  RBH91_RS15450 - 3121758..3122270 (-) 513 WP_076763387.1 adenine phosphoribosyltransferase -
  RBH91_RS15455 recJ 3122276..3124636 (-) 2361 WP_307892136.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RBH91_RS15460 - 3124709..3125002 (-) 294 WP_076763382.1 lipopolysaccharide assembly LapA domain-containing protein -
  RBH91_RS15465 secDF 3125172..3127397 (-) 2226 WP_307892137.1 protein translocase subunit SecDF -
  RBH91_RS15470 - 3127437..3127733 (-) 297 WP_076763377.1 post-transcriptional regulator -
  RBH91_RS15475 spoVB 3127850..3129403 (+) 1554 WP_307892138.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88423.93 Da        Isoelectric Point: 4.7964

>NTDB_id=871752 RBH91_RS15455 WP_307892136.1 3122276..3124636(-) (recJ) [Bacillus swezeyi strain EA208]
MLASKMRWDVQTPDNEKVEQLAEQLGITPLAASLLIMRGYDTAGKATSFLYGKDAVFHDPYLLKDMEKAVRRIKQAISED
EQIMIYGDYDADGVTSTTVLLQILKKYSAQVDFYIPDRFKEGYGPNEAAFRQIKEEGYSLIVTVDTGIAAVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCSYPFKELAGVGVAFKLAHALNGDIPDDLLDLCAIGTVADLVPLHDENRLM
AKLGMVQFRKTNRPGLRALTKIAGAEIQSANEETIGFQIAPRINAVGRIDQADPAVHLLNTEDDMEAEELAEEINALNKE
RQKIVNQMTEEAVQMIEEQGLDQPVIVAARPGWNPGVVGIVASKLVERYYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSDCRDILPHFGGHPMAAGMTLSQDDVSALRERINRQAESVLTAEDFIPVQEVDLCCRLEEITVDSIAEMNMLAPFGTGN
PKPFVLVSDVKIDETRRIGANKNHLKLLLADGESKLDCIGFYKGDIEEGIVPGANISLVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEERILKLDPSKRAILCFREETKAKLAGTGLEEELILIRGEEDAERLDLHSRYAVFIDTPQSIDI
FDHVIKGKQLERIYLIFHQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLAKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLTVVFDAVKRDLTDSETYREKQRLIELEQKLVYSSADELKQWLNKRMGESSDAYESMRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=871752 RBH91_RS15455 WP_307892136.1 3122276..3124636(-) (recJ) [Bacillus swezeyi strain EA208]
ATGTTAGCGTCAAAAATGCGTTGGGATGTGCAAACGCCCGACAATGAAAAGGTGGAGCAGCTCGCCGAACAATTGGGCAT
TACTCCCCTTGCCGCCTCATTGCTTATCATGAGAGGCTACGATACAGCCGGCAAAGCGACTTCATTTTTGTATGGCAAGG
ATGCTGTCTTTCATGATCCTTACTTGCTAAAAGATATGGAGAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGAAGAT
GAACAGATTATGATTTACGGAGATTATGATGCGGACGGTGTGACAAGCACGACGGTCCTTTTGCAGATTTTGAAAAAGTA
TTCAGCACAAGTCGATTTTTATATACCCGACCGCTTCAAAGAAGGGTACGGTCCGAATGAAGCCGCCTTCCGGCAAATCA
AAGAAGAGGGCTATTCTCTGATCGTCACGGTGGATACCGGCATTGCCGCCGTTCACGAAGCAGAAGTCGCGAAAGAACTC
GGCATCGATTTGATTATTACAGATCACCATGAGCCAGGGCCGGTTTTGCCTGATGCCTATGCGATCATTCATCCTAAGCA
GCCGGGCTGCAGTTATCCTTTTAAAGAGCTGGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCACGCATTGAACGGAGATA
TTCCTGATGATCTGCTTGATCTTTGTGCGATCGGAACGGTTGCCGACCTTGTGCCGCTTCATGATGAGAACAGACTCATG
GCCAAGCTCGGCATGGTTCAGTTCAGAAAAACGAACCGCCCAGGCTTAAGAGCGCTGACGAAGATTGCGGGAGCGGAGAT
TCAAAGTGCAAATGAAGAGACGATCGGCTTTCAAATCGCTCCGCGCATCAATGCGGTCGGAAGGATTGACCAGGCTGATC
CGGCCGTTCATCTTTTAAACACAGAAGATGACATGGAGGCGGAAGAGCTGGCCGAAGAAATCAACGCCTTGAATAAGGAA
CGCCAAAAAATCGTCAACCAGATGACAGAGGAAGCGGTTCAGATGATAGAGGAGCAAGGCCTTGACCAGCCTGTGATCGT
CGCGGCTCGGCCCGGCTGGAATCCCGGCGTCGTCGGAATTGTCGCTTCAAAGCTTGTCGAACGGTACTACCGCCCGGCCA
TCGTTCTCGGAATTGATGAAGAAAAAGGAATAGCTAAAGGCTCGGCGCGCAGTATTAAAGGCTTTGACTTATTTCAGAAT
CTTTCCGACTGCCGGGACATACTTCCGCATTTTGGCGGCCACCCGATGGCAGCCGGGATGACGCTCAGCCAAGACGATGT
TTCGGCTTTAAGAGAAAGGATCAACCGCCAGGCTGAATCCGTTTTAACAGCGGAAGACTTCATCCCCGTCCAGGAAGTCG
ATCTTTGCTGCCGGTTGGAGGAGATTACGGTTGACAGCATTGCGGAAATGAACATGCTGGCTCCATTCGGTACGGGGAAT
CCGAAGCCGTTCGTTCTTGTCAGCGACGTCAAAATTGATGAAACGAGAAGAATCGGTGCCAATAAGAATCACCTGAAGCT
TTTGCTGGCTGACGGCGAGTCAAAGCTCGACTGCATCGGTTTCTATAAAGGCGATATTGAAGAAGGAATCGTTCCCGGCG
CAAACATTTCGCTTGTCGGCGAATTGTCGATTAATGAATGGAACAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTAAACGAATGGCAGCTGTTTGATCTGCGCGGAAAACGGTCATGGGAAGAACGAATATTAAAATTGGATCCGTCAAA
ACGCGCAATTCTCTGTTTTCGGGAAGAGACGAAAGCAAAACTTGCGGGAACAGGCCTTGAAGAAGAACTGATTTTGATCA
GAGGAGAAGAGGATGCAGAGCGTCTCGATTTACATAGCCGTTATGCGGTTTTTATTGATACGCCTCAGTCTATCGATATA
TTTGATCATGTCATAAAAGGCAAACAGCTGGAGCGGATTTACCTGATTTTTCATCAATCAGATGAACATTTTTTCTCGAC
GTTTCCAACAAGGGAATATTTTAAGTGGTACTATGCTTTCCTCCTGAAAAGAGGCTCTTTTGATTTAGCGAAATACGGCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTAACTGTTGTATTTGATGCCGTAAAACGGGATTTAACAGATTCTGAAACTTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCGTATATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAATAAGCGGATGG
GCGAAAGCTCTGACGCTTATGAAAGTATGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

68.321

100

0.683