Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   RBH91_RS15375 Genome accession   NZ_CP133085
Coordinates   3104248..3106614 (-) Length   788 a.a.
NCBI ID   WP_307894771.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3099248..3111614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS15355 - 3102197..3103255 (-) 1059 WP_307892126.1 AI-2E family transporter -
  RBH91_RS15360 - 3103342..3103473 (-) 132 WP_076763412.1 DUF3918 family protein -
  RBH91_RS15365 - 3103489..3103680 (-) 192 WP_076763410.1 hypothetical protein -
  RBH91_RS15370 - 3103694..3104158 (-) 465 WP_076763408.1 PRC-barrel domain-containing protein -
  RBH91_RS15375 recD2 3104248..3106614 (-) 2367 WP_307894771.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RBH91_RS15380 - 3106696..3107346 (-) 651 WP_076763520.1 tetratricopeptide repeat protein -
  RBH91_RS15385 mnmA 3107440..3108558 (-) 1119 WP_307892127.1 tRNA 2-thiouridine(34) synthase MnmA -
  RBH91_RS15390 - 3108659..3109798 (-) 1140 WP_307892128.1 cysteine desulfurase family protein -
  RBH91_RS15395 cymR 3109818..3110234 (-) 417 WP_076763402.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88403.98 Da        Isoelectric Point: 5.1836

>NTDB_id=871751 RBH91_RS15375 WP_307894771.1 3104248..3106614(-) (recD2) [Bacillus swezeyi strain EA208]
MDEASFLKGTVSTVIYHNETNLYTVLKVKVQETSESFDEKNVSVTGYFPAIFEDETYTFYGKTASHPKFGLQFQADHFKK
EVPTTKEGVIQYLASDLFEGIGKKTAEEIVKKLGEGAINKILGDAAVLYDVPKLSKKKAEKLAAALQKHQGLEQIMISLS
EFGFGPQLSMKIYQAYESETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHAERIKAAILYAIEAACLQEGHTYI
QTKQLIIETQKLLNQSSGDEKVTEMDVADAIIALGEQKELFVEDDRCYYPSLYYAEQSFAKRVQKIADQTEYDEQFPESE
FLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSELHGLSLNPADYKKDEAFPFVLAAP
TGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGKLIIIDETSMLDIWLANQLFKAIPDHVQVIMVGDEDQLP
SVGPGQVLRDLLASNAIPSVRLTDIYRQAEGSSIVEMAHEMKKGRLPNHLTAPTKDRSFIRCRQQQIKEVVEKVVKNALQ
KGYTARDIQVLAPMYRGTAGINELNSSLQNILNPPKPKGREMKYGDVVYRTGDKILQLVNQPEHNVFNGDMGEIVSIFYA
KENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAITRSKKFLILCG
EEEALAWGVKNKESSERQTSLKRRLLQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=871751 RBH91_RS15375 WP_307894771.1 3104248..3106614(-) (recD2) [Bacillus swezeyi strain EA208]
ATGGACGAAGCCTCTTTTCTGAAAGGAACGGTATCAACGGTCATTTATCATAATGAAACAAATCTTTATACCGTTCTGAA
AGTGAAAGTGCAGGAAACATCGGAGTCTTTCGATGAAAAAAACGTTTCCGTGACGGGGTACTTTCCTGCGATCTTTGAAG
ACGAAACCTATACATTTTACGGAAAAACCGCCTCCCATCCGAAGTTCGGCCTGCAATTTCAAGCGGATCATTTTAAAAAA
GAAGTCCCTACGACAAAGGAAGGGGTCATTCAATATTTAGCAAGTGATTTATTTGAAGGCATCGGCAAAAAAACGGCTGA
AGAAATCGTCAAAAAGCTTGGAGAAGGCGCGATCAACAAAATTTTAGGCGACGCTGCCGTGCTTTATGATGTGCCGAAGC
TCTCCAAAAAAAAGGCGGAAAAGCTTGCCGCTGCACTCCAGAAGCACCAGGGGCTTGAGCAGATTATGATCTCCTTAAGC
GAGTTTGGTTTCGGACCGCAGCTTTCCATGAAAATTTATCAAGCATATGAATCAGAAACGCTTGATAAAATCCGCGAAAA
TCCGTACCAGCTTGTCAAGGATGTAGAAGGAATCGGCTTTATCAAGGCTGATGAACTCGGCGGCAGAATGGGGATCTCAG
GCAAGCATGCAGAGCGGATCAAAGCGGCGATTTTATATGCGATTGAAGCAGCATGCCTTCAGGAAGGTCATACGTACATA
CAAACAAAACAGCTTATCATTGAAACCCAAAAGCTGTTAAACCAATCGTCCGGCGATGAAAAAGTGACGGAAATGGATGT
GGCCGATGCGATTATAGCGCTCGGTGAACAAAAAGAACTGTTCGTCGAGGATGACAGATGCTACTACCCGTCGCTTTACT
ATGCCGAACAAAGCTTTGCCAAAAGAGTTCAGAAGATCGCGGATCAAACCGAATATGATGAACAGTTTCCCGAGTCCGAA
TTTTTGCTTGCTTTAGGCGAGCTTGAAGAACGGATGCAGGTTCAATATGCGCCAAGCCAAAAAGAAGCCATTCAAAAAGC
GCTGATGTCGCCGATGCTGCTGTTGACGGGTGGCCCGGGTACAGGGAAAACAACCGTCATCAAGGGAATCGTTGAATTGT
ACAGCGAGTTGCACGGCTTGAGTCTAAATCCTGCTGATTATAAAAAAGATGAAGCATTTCCATTTGTATTGGCTGCGCCA
ACAGGGAGAGCCGCGAAGCGGATGAGCGAGTCGACCGGCCTCCCGGCTGTGACGATCCACAGGCTCCTTGGCTGGAACGG
TGCTGAAGGCTTTACACATGATGAAGACAATCCGATCGAAGGAAAGCTAATCATTATCGATGAAACAAGCATGCTTGATA
TTTGGCTTGCCAACCAATTATTTAAAGCGATTCCCGACCATGTACAGGTGATTATGGTCGGGGACGAGGACCAGCTTCCA
TCGGTCGGTCCCGGCCAGGTGCTTAGAGACCTTCTGGCATCAAATGCCATTCCGTCAGTCAGATTAACTGATATTTACAG
GCAGGCAGAAGGGTCTTCGATTGTGGAAATGGCCCATGAAATGAAAAAAGGGAGACTTCCGAATCATTTGACAGCGCCGA
CAAAAGACCGTTCTTTTATCCGCTGCCGCCAGCAGCAAATCAAAGAGGTTGTTGAAAAAGTCGTCAAAAATGCGCTGCAA
AAAGGATATACTGCGCGGGACATCCAAGTGCTCGCTCCGATGTACAGAGGCACGGCCGGAATCAATGAATTAAACTCATC
TTTGCAAAATATTCTGAATCCCCCGAAACCAAAGGGAAGGGAAATGAAGTACGGAGATGTCGTATATCGGACCGGCGATA
AGATTCTCCAGCTCGTCAATCAGCCGGAACACAATGTATTCAATGGCGATATGGGCGAGATCGTTTCGATTTTCTATGCG
AAAGAAAACACGGAAAAAGAAGATATGGCGGTCGTCTCTTTTGACGGAAACGAAATCACTTTCACAAAAAAAGATTTTAA
TCAATTTACACATGCGTATTGCTGCTCCATTCATAAATCACAAGGGAGCGAATTCCCGATTGTCATTCTTCCCGTCGTGA
AAAGCTATTATCGGATGCTGAAAAGAAATCTGCTTTATACAGCCATCACAAGAAGCAAAAAATTCCTGATTTTGTGCGGT
GAAGAAGAAGCTCTTGCATGGGGCGTCAAAAACAAAGAATCATCAGAAAGACAGACATCACTCAAAAGAAGGCTTCTGCA
GGCGGCGCATGAAGAGGATGAGGAGCTGATGGCGCTGCAAAAAGAACTGCCATTCAGCGTATATGACGCCAATATCGGAA
TGGAAGGCATCACACCTTTTGATTTTATGGAAAAAGAAGCGGAATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-239)

AAA domain (AAA_30)

(336-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

82.003

100

0.821