Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RBH91_RS14225 Genome accession   NZ_CP133085
Coordinates   2889359..2890396 (-) Length   345 a.a.
NCBI ID   WP_307891995.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2884359..2895396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS14180 sipW 2885017..2885601 (-) 585 WP_076761845.1 signal peptidase I SipW -
  RBH91_RS14185 tapA 2885598..2886338 (-) 741 WP_307891991.1 amyloid fiber anchoring/assembly protein TapA -
  RBH91_RS14190 - 2886608..2886928 (+) 321 WP_076761847.1 DUF3889 domain-containing protein -
  RBH91_RS14195 - 2887232..2887414 (-) 183 WP_076761848.1 YqzE family protein -
  RBH91_RS14200 comGG 2887497..2887865 (-) 369 WP_307891992.1 competence type IV pilus minor pilin ComGG -
  RBH91_RS14205 comGF 2887877..2888368 (-) 492 WP_307891993.1 competence type IV pilus minor pilin ComGF -
  RBH91_RS14210 comGE 2888277..2888624 (-) 348 WP_076761851.1 competence type IV pilus minor pilin ComGE -
  RBH91_RS14215 comGD 2888608..2889051 (-) 444 WP_307891994.1 competence type IV pilus minor pilin ComGD -
  RBH91_RS14220 comGC 2889051..2889344 (-) 294 WP_076761852.1 competence type IV pilus major pilin ComGC Machinery gene
  RBH91_RS14225 comGB 2889359..2890396 (-) 1038 WP_307891995.1 competence type IV pilus assembly protein ComGB Machinery gene
  RBH91_RS14230 comGA 2890383..2891450 (-) 1068 WP_307891996.1 competence type IV pilus ATPase ComGA Machinery gene
  RBH91_RS14235 - 2891616..2892479 (-) 864 WP_307891997.1 STAS domain-containing protein -
  RBH91_RS14245 - 2892737..2893114 (-) 378 WP_076761856.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  RBH91_RS14250 - 2893330..2893575 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  RBH91_RS14255 - 2893617..2894255 (-) 639 WP_076761961.1 MBL fold metallo-hydrolase -
  RBH91_RS14260 - 2894411..2894584 (+) 174 WP_076761857.1 DUF2759 domain-containing protein -
  RBH91_RS14265 - 2894641..2894955 (-) 315 WP_076761858.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40111.77 Da        Isoelectric Point: 10.0622

>NTDB_id=871745 RBH91_RS14225 WP_307891995.1 2889359..2890396(-) (comGB) [Bacillus swezeyi strain EA208]
MRQIKNRWPVREQAELLEKLGKMMVSGYTLLDALKMLELQLNKKQRADISFGMRKLTEGYPVFQVMNLISFHKDAVSIIY
FAEQHGNLAFSFSQSGELLQRKIDQAEKIKKAAKYPLFLIMTVCIIAYILKAAIVPQFSAIYDSMNIETPFLTASILSLF
DSFTFLFIMMLLMFMAAAAYYLFRLRKQSPEARMLFFIRIPLLGRILKLFNSYFLSLQLSNLLKSGLSIYESLKAFESQP
FLPFYQKEAKCFIKRLKQGEAIDEILKGRPFYERDLSKAIAHGQLNGQLHRELYSYSQFLIGRLEKRAEQWTGIIQPLIY
GFTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=871745 RBH91_RS14225 WP_307891995.1 2889359..2890396(-) (comGB) [Bacillus swezeyi strain EA208]
ATGAGACAGATTAAAAACAGGTGGCCTGTCCGGGAACAGGCGGAGCTTCTCGAAAAGCTTGGTAAGATGATGGTAAGTGG
TTATACGCTTCTGGACGCTTTAAAAATGTTAGAACTGCAATTGAACAAAAAACAAAGAGCGGACATATCATTCGGGATGC
GAAAACTGACTGAAGGGTACCCGGTTTTTCAAGTGATGAATCTGATTTCGTTTCATAAAGATGCCGTCAGCATCATTTAT
TTTGCCGAACAGCATGGGAATCTGGCCTTTTCTTTCAGCCAAAGCGGAGAGCTGCTTCAACGCAAAATCGATCAGGCCGA
AAAAATCAAGAAGGCTGCGAAGTATCCGTTATTCTTAATTATGACAGTCTGTATTATTGCTTATATTTTGAAAGCTGCTA
TTGTTCCGCAATTTTCCGCGATTTACGACTCCATGAATATAGAAACACCCTTTCTGACAGCATCTATACTTTCACTTTTC
GACAGCTTCACGTTTTTGTTTATTATGATGCTGCTCATGTTTATGGCTGCGGCTGCGTACTATTTGTTCCGCTTACGAAA
GCAATCTCCTGAAGCCCGAATGCTTTTTTTCATCAGAATTCCCCTGTTGGGCAGAATCCTCAAATTATTTAACAGCTACT
TTTTATCGCTTCAGCTGAGCAATCTTCTAAAATCGGGCTTATCGATATACGAAAGTCTAAAAGCGTTTGAAAGCCAGCCC
TTTTTGCCGTTTTATCAAAAGGAAGCAAAATGTTTTATCAAGAGACTTAAACAAGGGGAAGCGATCGATGAAATTTTAAA
AGGGCGTCCGTTTTATGAAAGAGATCTGTCAAAAGCGATCGCTCACGGCCAGTTAAACGGTCAGCTTCACAGAGAGCTGT
ATTCATACAGCCAATTTTTGATCGGCCGGCTGGAAAAAAGGGCTGAACAGTGGACGGGCATCATTCAGCCGCTGATTTAC
GGGTTTACCGCGGCCATGATTTTAATTCTTTATCTGTCTATGCTTTTGCCAATGTATCAAATGATGAATCAATTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(217-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.623

0.528