Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RBH91_RS09590 Genome accession   NZ_CP133085
Coordinates   1927015..1927794 (+) Length   259 a.a.
NCBI ID   WP_076760511.1    Uniprot ID   A0A1R1QUH3
Organism   Bacillus swezeyi strain EA208     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922015..1932794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS09570 trmFO 1922714..1924018 (+) 1305 WP_307894373.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RBH91_RS09575 xerC 1924084..1924998 (+) 915 WP_307894375.1 tyrosine recombinase XerC -
  RBH91_RS09580 hslV 1925012..1925557 (+) 546 WP_076760509.1 ATP-dependent protease subunit HslV -
  RBH91_RS09585 hslU 1925565..1926977 (+) 1413 WP_307894377.1 HslU--HslV peptidase ATPase subunit -
  RBH91_RS09590 codY 1927015..1927794 (+) 780 WP_076760511.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RBH91_RS09595 flgB 1928145..1928534 (+) 390 WP_307894379.1 flagellar basal body rod protein FlgB -
  RBH91_RS09600 flgC 1928534..1928986 (+) 453 WP_076760512.1 flagellar basal body rod protein FlgC -
  RBH91_RS09605 fliE 1929000..1929317 (+) 318 WP_307894380.1 flagellar hook-basal body complex protein FliE -
  RBH91_RS09610 fliF 1929368..1930969 (+) 1602 WP_307894381.1 flagellar basal-body MS-ring/collar protein FliF -
  RBH91_RS09615 fliG 1930983..1931999 (+) 1017 WP_076760515.1 flagellar motor switch protein FliG -
  RBH91_RS09620 fliH 1931983..1932750 (+) 768 WP_307894382.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29015.38 Da        Isoelectric Point: 4.8964

>NTDB_id=871735 RBH91_RS09590 WP_076760511.1 1927015..1927794(+) (codY) [Bacillus swezeyi strain EA208]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQAKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=871735 RBH91_RS09590 WP_076760511.1 1927015..1927794(+) (codY) [Bacillus swezeyi strain EA208]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAACGCGGCAGGGAAGCCGGTTAACTTCAAAGAAAT
GGCTGAAACGCTTCGCGATGTAATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCTATTA
ATCAGCAGATTGAAAATGACCGGATGAAGAAAATGCTTGAAGAACGCCAATTTCCCGAAGATTATACGAAAAGCCTGTTC
AACATTCCGGAAACATCATCTAACCTTGATATCAACAGCGAATATACGGCATTTCCTGTAGAAAACCGCGACCTTTTCCA
AGCGGGGCTGACAACGGTTGTTCCGATTATTGGCGGTGGTGAGAGACTGGGAACTTTAATTCTTTCCCGTCTTCAAGCAA
AATTTGAAGACGATGACCTCATTCTTGCTGAATATGGAGCAACAGTCGTCGGAATGGAGATTCTGAGGGAGAAAGCTGAG
GAAATTGAAGAGGAAGCGCGGAGCAAAGCAGTCGTCCAAATGGCGATCAGCTCATTGTCATACAGTGAGCTTGAAGCGAT
CGAGCACATTTTTGAAGAGCTGGACGGAAACGAAGGTCTCCTCGTCGCAAGTAAAATTGCAGACCGCGTCGGCATTACGC
GCTCGGTGATCGTTAACGCTCTGCGTAAATTGGAGAGCGCCGGTGTCATCGAATCAAGATCATTAGGGATGAAAGGCACG
TATATCAAAGTCCTAAACAACAAATTCCTGATGGAATTAGAAAAGTTGAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1QUH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467