Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RBH91_RS09560 Genome accession   NZ_CP133085
Coordinates   1919454..1920356 (+) Length   300 a.a.
NCBI ID   WP_307894371.1    Uniprot ID   -
Organism   Bacillus swezeyi strain EA208     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1914454..1925356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS09540 - 1915104..1916804 (+) 1701 WP_307894367.1 hypothetical protein -
  RBH91_RS09545 - 1916801..1917082 (+) 282 WP_076760502.1 FlhB-like flagellar biosynthesis protein -
  RBH91_RS09550 sucC 1917258..1918418 (+) 1161 WP_307894369.1 ADP-forming succinate--CoA ligase subunit beta -
  RBH91_RS09555 sucD 1918437..1919339 (+) 903 WP_076760504.1 succinate--CoA ligase subunit alpha -
  RBH91_RS09560 dprA 1919454..1920356 (+) 903 WP_307894371.1 DNA-processing protein DprA Machinery gene
  RBH91_RS09565 topA 1920562..1922637 (+) 2076 WP_076760506.1 type I DNA topoisomerase -
  RBH91_RS09570 trmFO 1922714..1924018 (+) 1305 WP_307894373.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  RBH91_RS09575 xerC 1924084..1924998 (+) 915 WP_307894375.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33236.39 Da        Isoelectric Point: 10.0968

>NTDB_id=871734 RBH91_RS09560 WP_307894371.1 1919454..1920356(+) (dprA) [Bacillus swezeyi strain EA208]
MNEKSELLILLRLHGILPPAQLSKWWKADPSLSLAGKHTHPLTKLSANRSDLSAIRKLAEKELSNVKRLIRAYQADGVDM
IAISSPDYPPSLKMIHDPPPVLFLKGHKKLLDQHRLIGIVGTRNPSSYGKRAAAYLARELSKKDWTIVSGLAKGIDGLSH
QESIRSNGTTIGVIAGGFNHLYPRENRQLAEQMAEDHLLVSEHLPRTKPQKWHFPMRNRLISGLTEGIIVIQGKEKSGSL
ITAYQALEQGREVFAVPGSIFDRNSLGPARLIQEGAKLVCDINDILSELPPSNVQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=871734 RBH91_RS09560 WP_307894371.1 1919454..1920356(+) (dprA) [Bacillus swezeyi strain EA208]
ATGAATGAAAAAAGCGAACTTTTGATTTTGCTCCGCCTTCACGGCATTCTCCCCCCTGCTCAGCTTTCTAAATGGTGGAA
AGCAGACCCTTCTTTATCACTTGCAGGCAAACACACACACCCTTTAACAAAGCTTTCGGCCAATCGATCTGATCTATCCG
CCATTCGAAAGCTTGCCGAAAAAGAGCTCTCAAATGTCAAGCGCCTCATCAGAGCCTATCAGGCAGACGGAGTGGACATG
ATTGCGATTTCCTCTCCTGATTACCCGCCCTCATTGAAAATGATCCATGACCCGCCCCCTGTACTTTTTCTAAAAGGCCA
TAAAAAACTTCTTGATCAGCATAGACTGATCGGCATCGTGGGAACGAGAAATCCTTCTTCATATGGGAAAAGAGCCGCAG
CCTACCTGGCGAGGGAGCTTAGTAAAAAAGACTGGACGATCGTCAGCGGGCTTGCAAAAGGAATCGACGGCCTCTCCCAT
CAAGAGAGCATCCGTTCAAATGGAACGACAATCGGAGTCATCGCCGGCGGATTCAACCACTTATATCCCCGTGAAAACCG
CCAGCTTGCCGAACAGATGGCTGAAGACCATCTCCTGGTATCTGAGCACCTTCCCCGCACAAAACCTCAAAAATGGCACT
TTCCAATGCGAAATCGGCTGATCAGCGGTTTGACAGAAGGAATTATTGTCATCCAAGGAAAGGAAAAAAGCGGTTCGCTC
ATCACAGCTTATCAGGCGCTTGAACAAGGGCGGGAAGTGTTTGCAGTGCCGGGTTCAATCTTTGACAGAAACTCGCTGGG
ACCCGCAAGGCTGATTCAGGAAGGGGCGAAACTTGTATGTGATATCAATGATATTCTCAGCGAACTTCCGCCTTCCAATG
TTCAATATACGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.667

100

0.577