NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	RBI11_RS17890	Genome accession	NZ_CP133052
Coordinates	3787343..3788044 (-)	Length	233 a.a.
NCBI ID	WP_000594582.1	Uniprot ID	A0AAX0TJI0
Organism	Acinetobacter baumannii strain A1014
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3782343..3793044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBI11_RS17860 (RBI11_17895)	-	3782650..3783093 (-)	444	WP_001246675.1	SRPBCC family protein	-
RBI11_RS17865 (RBI11_17900)	tadA	3783163..3783666 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
RBI11_RS17870 (RBI11_17905)	-	3783673..3784797 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
RBI11_RS17875 (RBI11_17910)	ung	3784794..3785507 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
RBI11_RS17880 (RBI11_17915)	-	3785558..3786154 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
RBI11_RS17885 (RBI11_17920)	gspK	3786384..3787343 (-)	960	WP_057092779.1	type II secretion system minor pseudopilin GspK	-
RBI11_RS17890 (RBI11_17925)	xcpW	3787343..3788044 (-)	702	WP_000594582.1	type II secretion system minor pseudopilin GspJ	Machinery gene
RBI11_RS17895 (RBI11_17930)	xcpV	3788044..3788424 (-)	381	WP_000836912.1	type II secretion system minor pseudopilin GspI	Machinery gene
RBI11_RS17900 (RBI11_17935)	-	3788414..3788968 (-)	555	WP_000841373.1	type II secretion system protein	-
RBI11_RS17905 (RBI11_17940)	-	3788978..3789586 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
RBI11_RS17910 (RBI11_17945)	-	3789624..3790397 (-)	774	WP_000497298.1	TatD family hydrolase	-
RBI11_RS17915 (RBI11_17950)	-	3790415..3790756 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
RBI11_RS17920 (RBI11_17955)	-	3790768..3791748 (-)	981	WP_057092777.1	DNA polymerase III subunit delta'	-
RBI11_RS17925 (RBI11_17960)	kdsB	3791760..3792521 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26577.60 Da Isoelectric Point: 9.5501

                                >NTDB_id=871524 RBI11_RS17890 WP_000594582.1 3787343..3788044(-) (xcpW) [Acinetobacter baumannii strain A1014]

MIKNKYIHIRSIASRLAARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQIHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVIKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=871524 RBI11_RS17890 WP_000594582.1 3787343..3788044(-) (xcpW) [Acinetobacter baumannii strain A1014]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAGCTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAAATTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCATAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987

Detailed information NTG0871524