Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SHJJP9002_RS05970 Genome accession   NZ_CP133006
Coordinates   1254613..1257000 (+) Length   795 a.a.
NCBI ID   WP_107550803.1    Uniprot ID   -
Organism   Staphylococcus casei strain SCK7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249613..1262000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9002_RS05950 (SHJJP9002_001188) sal 1249858..1251489 (+) 1632 WP_341636948.1 Sal family ABC-F type ribosomal protection protein -
  SHJJP9002_RS05955 (SHJJP9002_001189) - 1251551..1252693 (+) 1143 WP_341636949.1 cysteine desulfurase family protein -
  SHJJP9002_RS05960 (SHJJP9002_001190) mnmA 1252694..1253806 (+) 1113 WP_069823900.1 tRNA 2-thiouridine(34) synthase MnmA -
  SHJJP9002_RS05965 (SHJJP9002_001191) - 1253944..1254609 (+) 666 WP_107550802.1 tetratricopeptide repeat protein -
  SHJJP9002_RS05970 (SHJJP9002_001192) recD2 1254613..1257000 (+) 2388 WP_107550803.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SHJJP9002_RS05975 (SHJJP9002_001193) alaS 1257354..1259984 (+) 2631 WP_341636950.1 alanine--tRNA ligase -
  SHJJP9002_RS05980 (SHJJP9002_001194) - 1260053..1260313 (+) 261 WP_046836609.1 IreB family regulatory phosphoprotein -
  SHJJP9002_RS05985 (SHJJP9002_001195) ruvX 1260317..1260745 (+) 429 WP_046836608.1 Holliday junction resolvase RuvX -
  SHJJP9002_RS05990 (SHJJP9002_001196) - 1260762..1261088 (+) 327 WP_069823904.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89336.87 Da        Isoelectric Point: 4.5234

>NTDB_id=871300 SHJJP9002_RS05970 WP_107550803.1 1254613..1257000(+) (recD2) [Staphylococcus casei strain SCK7]
MEDPTLFTSSMIKGTVDAILFQNKENFYTVLKVDMIESNESFDSMPTIVGFFPEITEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNNPEILEKVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYMGDTLDIVESKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEACIKQG
HTYLPTNNVLEMTQDMLSQPPAEMIDTQQLETVLQDLVSDTKLIQQENEIAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGDIEERNKVSYADSQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLADATGLEAMTIHRLIGWNQDTSPEDILDNEISAKLIIIDEMSMVDTWLFHQFMSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGESIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
HKGYDMSDIQVLAPMYKGSAGIKKLNTVLQHILNPKEKDTREIEFGDVFFRKGDKVLQLVNRPSDNIFNGDIGEIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCSLLKAYFNNEAISEDEDTNQSIDAETVLTEATMFKIDPMINMGTISPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=871300 SHJJP9002_RS05970 WP_107550803.1 1254613..1257000(+) (recD2) [Staphylococcus casei strain SCK7]
ATGGAAGACCCTACATTATTCACGAGTTCTATGATTAAAGGCACTGTTGATGCAATTTTATTTCAAAATAAAGAGAACTT
TTATACAGTTTTAAAAGTAGATATGATTGAATCAAATGAATCATTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
AAATAACTGAAGGCGATGTCTATACTTTTAAAGGTCAAGTTGTTACCCATTCAAAATACGGCAAACAATTAAAGGCTGAA
ACGTTTGAAAAGGAATTACCACAAACGAAAGAAGCTATTATAAGTTATTTATCCAGTGATTTATTTAAAGGTATAGGAAA
AAAAACAGCACAAAGCATTGTAAATAAATTAGGCGAAAATGCGATAAATGATATCTTAAATAATCCAGAAATATTAGAAA
AAGTACCGGGGTTACCTAAGAAAAAACAAAAGCAAATTGCTGAGCAGATTGCAAGCAATCAAGAAACCGAACAAATCATT
ATACGGTTACATGATTTAGGATTTGGGCCTAAACTTGCAATGGCTATTTATCAAGCTTATATGGGAGATACACTTGATAT
AGTTGAAAGTAAACCCTACCAACTTGTTTATGATGTGAAAGGTATTGGCTTTAACAAGGCAGATACTTTAGCTAGGAATG
TTGGTATCCAGTTTAATGATGCTGAGCGTCTTAAGGCAGGCTTACTATATGTATTAGAAGAAGCGTGTATTAAACAAGGT
CATACCTATTTACCAACGAATAATGTATTGGAAATGACTCAAGATATGCTATCGCAACCACCAGCTGAGATGATTGACAC
GCAACAATTAGAAACAGTGTTACAAGATTTAGTTAGTGATACTAAGTTAATTCAACAAGAGAATGAAATTGCTATACCCA
GCCTATATTATTCAGAACTTAAAAGTGTGCAAAATTTATATCGTAATTTCAGCTATACCAACAAATTAAAAGAAATCGAA
CAATCAGATTTGTTACTTGAAATTGGCGATATTGAAGAAAGAAATAAAGTGTCATATGCTGACTCACAAAGAGAAGCGTT
ACAAACTGCAATCAATTCTAAGGTAATGTTACTTACTGGTGGGCCAGGTACAGGAAAAACGACAGTGATAAAAGGTATTG
TCGAGTTATATGCTGAAATTCATGGTTTATCTTTGGATTATGATGATTATCAAAACGATGATTATCCAGTGGTTTTAGCA
GCACCAACCGGAAGAGCTTCAAAGCGATTGGCTGATGCCACAGGCTTAGAAGCAATGACAATTCATAGATTAATTGGATG
GAATCAGGATACATCACCAGAAGATATTTTAGATAATGAAATTTCGGCCAAACTGATCATTATAGACGAAATGTCTATGG
TTGATACATGGTTGTTTCATCAATTTATGAGTGCTGTGCCGATAGATGCGCAAGTCATTTTAGTAGGTGATGAAGATCAA
TTACCTTCTGTTGGACCGGGACAAGTATTTAAAGATTTAATTGATTCTAAGGTCATACCTCGTGTGAATCTGACCGAAGT
CTATCGTCAACAAGATGGCTCGAGTATTATTGAATTGGCTCACAGAATGAAATTAGGTGAGTCCATAGATATTACGCAAC
GATTCCATGATCGTAATTTTATTAATTGTAGTACAGATCAAATCCCATCTGTCGTAGAAAAAGTAGTATCAAGTGCAGTG
CATAAAGGCTATGACATGAGTGATATACAAGTATTGGCTCCTATGTACAAAGGTTCAGCCGGTATTAAAAAGTTGAATAC
TGTATTACAACATATCTTAAATCCTAAAGAAAAAGATACACGAGAAATAGAATTTGGTGATGTTTTCTTTAGAAAAGGTG
ATAAAGTGTTGCAACTGGTAAATAGGCCGAGTGATAATATTTTTAATGGTGATATCGGCGAAATTGTTGGTATATTCTGG
GCAAAAGAAAATGCTTTGAATAAAGATGTACTTGTAGTTGATTTCGAGGGGAATGAAATAACATTCACACGTCAAGATTT
AATGGAATTGACACATGCTTATTGTACCTCAATCCATAAATCGCAAGGTTCTGAATTTCCAATTGTGATCATGCCGATGG
TAAAACAATATTTTAGAATGTTACAAAAACCTATTTTATATACCGGTCTTACACGAGCCAAGCAATCTTTAGTCTTTTTG
GGTGACCCGCAAGCGTTTGATATAGGATTGAAGACACATGGACAAGTGAGAATGACACAACTATGTTCACTCTTGAAAGC
TTACTTCAATAATGAAGCAATTTCAGAAGACGAAGATACCAATCAAAGTATTGATGCAGAAACAGTATTAACAGAAGCTA
CAATGTTTAAAATTGACCCAATGATAAATATGGGAACTATTTCTCCATATGATTTCGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix domain (HHH_5)

(103-149)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.063

100

0.501