Detailed information NTG0871267

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: SHJJP9001_RS05660
• Genome accession: NZ_CP132999
• Coordinates: 1202959..1205391 (+)
• Length: 810 a.a.
• NCBI ID: WP_002440136.1
• Uniprot ID: Q5HNT1
• Organism: Staphylococcus epidermidis strain SEA37
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1197959..1210391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHJJP9001_RS05635 (SHJJP9001_001127)	-	1198285..1198428 (+)	144	WP_001830746.1	SAS049 family protein	-
SHJJP9001_RS05640 (SHJJP9001_001128)	-	1198628..1199623 (-)	996	WP_001830781.1	LLM class flavin-dependent oxidoreductase	-
SHJJP9001_RS05645 (SHJJP9001_001129)	-	1199866..1201008 (+)	1143	WP_001830848.1	cysteine desulfurase family protein	-
SHJJP9001_RS05650 (SHJJP9001_001130)	mnmA	1201008..1202126 (+)	1119	WP_161387410.1	tRNA 2-thiouridine(34) synthase MnmA	-
SHJJP9001_RS05655 (SHJJP9001_001131)	-	1202289..1202957 (+)	669	WP_001832695.1	tetratricopeptide repeat protein	-
SHJJP9001_RS05660 (SHJJP9001_001132)	recD2	1202959..1205391 (+)	2433	WP_002440136.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SHJJP9001_RS05665 (SHJJP9001_001133)	alaS	1205720..1208350 (+)	2631	WP_002440135.1	alanine--tRNA ligase	-
SHJJP9001_RS05670 (SHJJP9001_001134)	-	1208414..1208674 (+)	261	WP_001830883.1	IreB family regulatory phosphoprotein	-
SHJJP9001_RS05675 (SHJJP9001_001135)	ruvX	1208676..1209104 (+)	429	WP_341591559.1	Holliday junction resolvase RuvX	-
SHJJP9001_RS05680 (SHJJP9001_001136)	-	1209119..1209427 (+)	309	WP_001830855.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 91866.57 Da
• Isoelectric Point: 4.7006

>NTDB_id=871267 SHJJP9001_RS05660 WP_002440136.1 1202959..1205391(+) (recD2) [Staphylococcus epidermidis strain SEA37]
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDVYTFKGQVVQHPRYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSELKSVQNLYRIKTNTSKLKEIE
QSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPDVVDKVVKSAV
AKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKNNLTTNKQTINEQKENNNHLDLKNEKENDIQLNESTIFQIDPMINMG
EMTPYDFVER

Nucleotide

• Length: 2433 bp

>NTDB_id=871267 SHJJP9001_RS05660 WP_002440136.1 1202959..1205391(+) (recD2) [Staphylococcus epidermidis strain SEA37]
ATGTCTGACCCTACACTTTTTGATTATTCAATGATCAAAGGTACAGTTGATGCTATTTTATTTCAAAATACGGATAATTT
TTATACTGTTCTAAAAGTAGATACTATAGAATCAAATGAAAAATTTGATAGTATGCCAACTGTGGTAGGGTTTCTTCCCA
ATGTAGTTGAAGGCGATGTTTATACTTTTAAAGGGCAAGTCGTACAACATCCACGTTATGGTAAGCAATTAAAGGCTGAA
ACATTTGAAAAAGAATTACCTCAAACTAAAGAAGCCATTATTAGTTACTTATCAAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCTCAAAACATTGTAAATACACTAGGTGAAAATGCTATAAATGATATTTTAACTCGTCCAGAAATCTTAGAAA
GTGTACCTAGTTTACCAAAGAAGAAACAAAAGCAAATTGCTGATCAGATTAATGCAAACCAAGAATCTGAGAAAATTATG
ATACGTTTACACGACCTAGGGTTTGGTCCGAAATTATCAATGGCTATATATCAGTTCTATATGGGTGATACTTTAAATGT
CTTAGATAAAAATCCTTACCAATTAGTATATGACATTAAAGGTATTGGTTTTAATAAGGCTGACCAACTTGCTCGAAATG
TCGGTATTGAGCCACATTCACCTGAAAGATTAAAAGCAGCATTATTATTTACGTTAGAAGAAGAATGTATCAAACAAGGA
CATACATATCTACCTCGTACAATTGTTATAGAAACAACACAAAATTTACTCAATGAAGATATTGAGAAACCAATTGAAAC
AGAGCAATTACTAGAAATCATTGACGTTTTATCAGAAGAGAAAAAATTAATATCTGAAGCTGATCAGGTATCAATTCCAA
GTTTATACTATTCAGAATTGAAAAGTGTGCAAAACTTATACCGAATTAAAACAAACACATCTAAATTAAAAGAAATAGAA
CAGTCTGATTTACAAATACATATTGGTGATATTGAGTCACAAAATGAGGTTAATTACTCTGCCTCTCAAAAAGAAGCGCT
TGAAACAGCAATAAATTCTAAAATTATGCTTTTAACTGGTGGTCCGGGTACCGGTAAAACCACAGTCATTAAAGGTATAG
TTGAATTATATGCAGAAATACATGGGCTCTCGCTCGATTATGATGATTACAATGAAGATGATTATCCAGTAGTGTTAGCT
GCACCCACTGGTCGTGCTTCTAAGCGCCTTCACGAATCGACAGGTTTAGAAGCAATGACAATTCATCGTTTAATCGGTTG
GAACCAAGATACACAACCACAGGATATTTTAGAAAATGAGATCAATGCAAGACTCATTATCATCGATGAAATGTCAATGG
TAGATACTTGGTTGTTCCATCAATTTTTAAGCGCTGTGCCTTTAGAAGCACAAATTGTATTTGTCGGAGATGAAGATCAG
TTACCATCAGTAGGTCCAGGACAGGTATTTAAAGACCTTATTGATTCTGAAATAATACCGCGTGTTAATCTTACCGAAGT
ATATCGTCAGCAAGATGGTTCCAGTATTATTGACTTAGCTCACCGTATGAAATTAAATGAACCTATCGATATTACTAAAC
GTTATCATGATCGTAGTTTTATTCGTTGTGGTACGAATCAAATTCCAGACGTTGTTGATAAAGTAGTTAAAAGCGCTGTA
GCTAAAGGCTATGATATGAGTGATATACAAGTTTTGGCTCCTATGTATAAAGGTAACGCTGGTATTAAGAGACTTAACCA
AGTTCTACAATCTATTCTTAATCCGAAGCAACAAGATGATCGTGAAATAGAATTTGGTGAAGCTGTGTTTAGAAAAGGGG
ATAAAGTACTTCAGTTAGTTAATCGACCTAATGATAATATATTTAATGGGGATATAGGTATAATAGTAGGTATATTTTGG
GCCAAAGAAAATGCTCTAAATAAGGATGTGTTAGTTGTAGATTTTGAAGGTAATGAAATTACATTTACTAAACAAGATTT
AATGGAACTAACACATGCATATTGTACATCTATCCATAAATCACAAGGTTCAGAATTTCCTATTGTAATTATGCCTATTG
TTAGACAATATTATAGGATGTTACAACGTCCCATTCTTTATACAGGATTAACTAGAGCTAAACAATCACTTGTTTTGCTT
GGTGAACAAGAAGCATTTGATATAGGTTTAAAAACAAATGGACAAATACGATTAACGCAATTAAATGATTTGTTAAAATC
GTATTTTGGACAAAACAAAAATAATTTAACTACAAATAAACAAACGATTAACGAACAAAAAGAAAATAACAATCATCTGG
ATTTGAAAAATGAAAAAGAAAATGATATCCAATTAAACGAGTCGACAATTTTCCAAATCGATCCAATGATTAATATGGGG
GAAATGACGCCATATGACTTCGTTGAACGTTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

3D structure

• AlphaFold DB: Q5HNT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.134	99.753	0.49