Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RBB60_RS10720 Genome accession   NZ_CP132966
Coordinates   2326703..2327356 (+) Length   217 a.a.
NCBI ID   WP_202841176.1    Uniprot ID   -
Organism   Chryseobacterium cucumeris strain PcE1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2321703..2332356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB60_RS10705 aceA 2321817..2323097 (-) 1281 WP_238349644.1 isocitrate lyase -
  RBB60_RS10710 aceB 2323206..2324780 (-) 1575 WP_202841174.1 malate synthase A -
  RBB60_RS10715 - 2324908..2326389 (+) 1482 WP_202841175.1 helix-turn-helix domain-containing protein -
  RBB60_RS10720 comF 2326703..2327356 (+) 654 WP_202841176.1 ComF family protein Machinery gene
  RBB60_RS10725 - 2327543..2328229 (+) 687 WP_137905768.1 alpha/beta fold hydrolase -
  RBB60_RS10730 upp 2328230..2328880 (-) 651 WP_062676151.1 uracil phosphoribosyltransferase -
  RBB60_RS10735 der 2329043..2330353 (-) 1311 WP_110008006.1 ribosome biogenesis GTPase Der -
  RBB60_RS10745 - 2331159..2331680 (-) 522 WP_202841177.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25167.05 Da        Isoelectric Point: 8.0788

>NTDB_id=870937 RBB60_RS10720 WP_202841176.1 2326703..2327356(+) (comF) [Chryseobacterium cucumeris strain PcE1]
MILDILFPNRCIHCSRIIDPELLVCDLCFSQIHFTHYNYFENNPIKEKCSLFFPVENAFALIQFEKEGLSRQIIHDLKYR
SREKAGKILADWTAERLDFKDNFPDLLVSVPLHPKKLKKRGYNQLHLFTETLSSFYNIPFDHNLIKRNHYSKAQALKDKK
HRLETVNTFSTTKPVTGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAEDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=870937 RBB60_RS10720 WP_202841176.1 2326703..2327356(+) (comF) [Chryseobacterium cucumeris strain PcE1]
ATGATATTAGATATATTGTTTCCTAACCGCTGCATCCACTGCAGCAGAATCATTGATCCTGAACTTTTGGTTTGTGATCT
TTGTTTCAGTCAGATTCACTTTACCCATTACAATTATTTTGAAAATAATCCGATTAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAACGCATTCGCTTTAATACAGTTTGAAAAGGAAGGTTTAAGCCGTCAGATTATTCACGATCTGAAATATAGA
AGCAGGGAAAAAGCAGGAAAAATCTTAGCCGATTGGACAGCAGAACGACTTGATTTCAAAGATAATTTCCCTGACCTTTT
AGTAAGTGTACCGCTTCATCCAAAGAAACTGAAGAAAAGGGGATATAACCAGCTGCATTTATTTACTGAAACTTTATCTT
CGTTTTATAACATTCCTTTTGATCATAATTTAATTAAACGAAATCATTATTCTAAAGCACAGGCCTTAAAAGACAAGAAA
CACAGACTGGAAACTGTCAATACATTCTCCACAACCAAGCCTGTTACCGGAAAACATATTCTTTTGATTGATGATGTTTT
CACGACAGGAAATACGGTTTCATCAGTGGCGTGGGAGATTTTAAATGCAGGAGATAATAAAGTAAGTGTTTTGGTGATGG
CTGAGGATGTTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512