Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RBB56_RS17770 Genome accession   NZ_CP132957
Coordinates   3859853..3861691 (+) Length   612 a.a.
NCBI ID   WP_306720278.1    Uniprot ID   -
Organism   Kineothrix sp. MB12-C1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3854853..3866691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB56_RS17755 (RBB56_17755) - 3855927..3857705 (+) 1779 WP_306720276.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  RBB56_RS17765 (RBB56_17765) - 3858057..3859853 (+) 1797 WP_306720277.1 ABC transporter ATP-binding protein -
  RBB56_RS17770 (RBB56_17770) rcrQ 3859853..3861691 (+) 1839 WP_306720278.1 ABC transporter ATP-binding protein Regulator
  RBB56_RS17775 (RBB56_17775) - 3861763..3863016 (-) 1254 WP_306720279.1 nucleotidyltransferase -
  RBB56_RS17780 (RBB56_17780) pta 3863285..3864286 (+) 1002 WP_306720280.1 phosphate acetyltransferase -
  RBB56_RS17785 (RBB56_17785) - 3864407..3865603 (+) 1197 WP_306720281.1 acetate kinase -
  RBB56_RS17790 (RBB56_17790) - 3865720..3866244 (+) 525 WP_306720282.1 DUF177 domain-containing protein -
  RBB56_RS17795 (RBB56_17795) rpmF 3866247..3866426 (+) 180 WP_306720283.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 68080.83 Da        Isoelectric Point: 7.1302

>NTDB_id=870882 RBB56_RS17770 WP_306720278.1 3859853..3861691(+) (rcrQ) [Kineothrix sp. MB12-C1]
MSEQSKPQKRSYGPGSGMMPGEKAKDFKGTTGKLLRYMGAYKYGLIAVVIFAIGGTAFGIVGPKIMSRAITEIFNGLMGK
YAGTGGINFDKIWQILLVLLGLYVFSAVLSFIQGFIMTGISQKLSYRFRQEISQKINRMPFEYFESKPVGEVLSRITNDV
DTLGQSLNQGITQLITSVITIIGVLIMMLSISPLMTLIAFVILPVSGILIGVTVKFSQKYFVSQQKYLGKINGQVEEIYG
GHNIVKAFNREEQVLKEFNETNEILYQSAWKSQFFSGMMHPIMNFVGNLGYVAVAVSGGFLVIKGSIQIGDIQAFIQYVR
NFTQPIAQVAQVSNMLQSMAAAAERVFEFLGEEEENRGEKALFLDNLEGNVSFEHVRFGYHPDKIIIHDFSSQVRAGEKV
AIVGPTGAGKTTMVKLLMHFYDVNGGKILVDGHDIKELERSELRKAFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIEA
AKAAHAHHFIQTLPGGYQMELNEEASNVSQGQKQLLTIARAILADSKIMILDEATSSVDMRTEARIQKAMNNLMKGRTSF
VIAHRLSTIRDADLILVMKDGDIIEQGNHEQLLAQKGFYSELYQSQFEEITA

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=870882 RBB56_RS17770 WP_306720278.1 3859853..3861691(+) (rcrQ) [Kineothrix sp. MB12-C1]
ATGAGTGAGCAAAGTAAACCTCAAAAAAGGTCATATGGGCCTGGAAGCGGAATGATGCCGGGGGAGAAGGCTAAGGACTT
CAAGGGTACAACCGGTAAGTTGTTACGATACATGGGTGCTTATAAGTATGGATTGATCGCAGTGGTGATTTTTGCCATAG
GCGGTACTGCCTTTGGTATTGTAGGACCGAAGATAATGAGTAGGGCAATCACCGAAATATTTAACGGACTTATGGGTAAG
TACGCAGGAACCGGAGGAATCAACTTTGATAAGATATGGCAGATTCTTCTTGTATTGCTCGGATTATATGTATTTAGTGC
GGTGCTATCCTTTATTCAGGGATTTATTATGACAGGAATCTCACAGAAACTTAGCTATAGATTTCGACAGGAGATCTCAC
AGAAAATTAATCGTATGCCCTTTGAATACTTTGAGTCGAAGCCGGTAGGAGAAGTTCTGTCTCGTATTACTAACGATGTG
GATACCTTAGGACAGAGTCTGAATCAAGGTATCACCCAGCTTATTACTTCAGTCATCACTATTATCGGTGTGCTTATTAT
GATGTTAAGCATTAGTCCGCTCATGACATTGATTGCCTTTGTAATTCTGCCTGTATCAGGTATTCTTATTGGGGTGACTG
TGAAGTTCTCCCAAAAATACTTCGTATCTCAGCAAAAATATTTAGGTAAGATTAACGGGCAGGTAGAAGAAATTTATGGA
GGCCATAACATTGTAAAAGCTTTCAACAGAGAAGAACAGGTACTGAAAGAATTCAATGAGACTAACGAGATTCTCTATCA
GTCTGCCTGGAAGTCTCAATTTTTCTCCGGAATGATGCATCCGATTATGAACTTTGTAGGTAACTTAGGTTATGTAGCAG
TTGCGGTAAGCGGCGGCTTTTTAGTAATTAAAGGGAGTATCCAAATTGGAGATATCCAAGCATTTATCCAATATGTAAGA
AACTTTACCCAACCGATCGCTCAAGTGGCACAAGTATCGAATATGCTTCAGTCTATGGCAGCAGCGGCGGAAAGAGTCTT
TGAATTCTTGGGTGAAGAGGAGGAAAACAGAGGAGAGAAGGCACTTTTCCTTGATAATCTGGAGGGGAATGTAAGTTTTG
AACATGTACGCTTTGGTTATCACCCTGATAAGATTATTATTCACGATTTCAGCAGTCAGGTAAGGGCTGGTGAGAAGGTA
GCGATCGTAGGACCTACGGGAGCGGGTAAGACAACGATGGTGAAGCTTTTGATGCACTTTTATGATGTGAATGGCGGAAA
GATTCTCGTAGACGGACACGACATTAAGGAGCTTGAAAGAAGTGAGCTTCGAAAAGCTTTCGGTATGGTATTACAAGATA
CCTGGCTGTTTAAAGGCACGATTATGGAAAATATCCGTTACGGTAGGCTGGATGCTACCGATGAAGAGGTGATTGAGGCA
GCAAAGGCAGCTCATGCCCATCATTTTATTCAGACACTTCCGGGTGGCTACCAAATGGAATTGAATGAAGAAGCGAGCAA
TGTATCCCAAGGGCAGAAACAGCTTCTCACGATTGCCAGAGCAATCCTTGCAGACAGTAAGATTATGATCCTTGACGAAG
CGACGAGTTCTGTGGATATGAGAACAGAAGCTCGTATTCAGAAGGCTATGAATAACTTGATGAAAGGAAGAACCAGTTTC
GTCATCGCCCATCGCCTCTCAACAATCCGCGATGCGGATTTAATCCTTGTAATGAAGGATGGGGATATTATCGAACAGGG
GAATCATGAGCAGTTGTTAGCACAAAAAGGCTTCTATTCAGAATTGTATCAATCTCAGTTTGAAGAAATTACCGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-325)

ABC transporter (ABC_tran)

(388-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.6

95.261

0.482