Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RA106_RS02170 Genome accession   NZ_CP132900
Coordinates   399122..400900 (+) Length   592 a.a.
NCBI ID   WP_024704205.1    Uniprot ID   A0A2X3V0E2
Organism   Streptococcus thermophilus strain CICC 20372     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 394122..405900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS02150 (RA106_02160) gdhA 394661..396013 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  RA106_RS02155 (RA106_02165) - 396271..396681 (+) 411 WP_011680804.1 peptide deformylase -
  RA106_RS02160 (RA106_02170) rcrR 396871..397314 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RA106_RS02165 (RA106_02175) rcrP 397318..399132 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  RA106_RS02170 (RA106_02180) rcrQ 399122..400900 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  RA106_RS02175 (RA106_02185) - 401056..401313 (+) 258 WP_224107491.1 hypothetical protein -
  RA106_RS02180 (RA106_02190) - 401448..402612 (+) 1165 Protein_382 sensor histidine kinase -
  RA106_RS02185 (RA106_02195) pyrH 402848..403585 (+) 738 WP_002949867.1 UMP kinase -
  RA106_RS02190 (RA106_02200) frr 403600..404157 (+) 558 WP_024704207.1 ribosome recycling factor -
  RA106_RS02195 (RA106_02205) cvfB 404248..405105 (+) 858 WP_024704208.1 RNA-binding virulence regulatory protein CvfB -
  RA106_RS02200 (RA106_02210) - 405114..405329 (+) 216 WP_024704209.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65080.06 Da        Isoelectric Point: 5.0166

>NTDB_id=870535 RA106_RS02170 WP_024704205.1 399122..400900(+) (rcrQ) [Streptococcus thermophilus strain CICC 20372]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPTKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYNSMWQSQFISGIMMPLMIFVGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGSIFEFLEEKDMDDESVKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIATAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=870535 RA106_RS02170 WP_024704205.1 399122..400900(+) (rcrQ) [Streptococcus thermophilus strain CICC 20372]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAACTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAGCTCTATAATTCTATGTGGCAATCTCAGTTTATCTCTGGTATTATGATGCCACTTATGATTTTCGTCGG
TAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATTGACGGAAGCCTGACCATCGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTTTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTAGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGTCAAGACAGCTGAGTTGACAGA
TACCAAGGGTCAAGTAGTCTTTGACCACGTTTCCTTTGGTTATACTCCTGAAAAGACTATCATTCATGATTTTTCAGCTC
TTGCCAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACAACCATTGTTAACCTGCTTATGAAA
TTCTATAATATCGATAAAGGCCGCATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACCGTCCATGATCA
ATTTTCTATGGTACTTCAAGACACTTGGCTCTTTGAAGGAACGATTCGAGATAACTTGATTTACAACCAAGAAAATATCT
CTGACGAGCAAGTTATTGCTACAGCCAAGGCCGTGGGTGTTCATCACTTCATCACCACACTTCCAAAAGGTTACGATACC
TATTTGGATGATTCTGTTACTTTATCAGTTGGTCAGAAACAACTTTTGACCATTGCGCGTGCACTTCTTAAGGATGCCCC
TCTTCTTATCTTGGACGAGGCAACATCATCAGTTGACACACGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3V0E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688