Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WHU51_RS16375 Genome accession   NZ_CP148314
Coordinates   3100655..3101122 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323MEC0002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3095655..3106122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU51_RS16330 (WHU51_16330) rplP 3095765..3096175 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  WHU51_RS16335 (WHU51_16335) rpsC 3096188..3096889 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  WHU51_RS16340 (WHU51_16340) rplV 3096907..3097239 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  WHU51_RS16345 (WHU51_16345) rpsS 3097254..3097532 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  WHU51_RS16350 (WHU51_16350) rplB 3097549..3098370 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  WHU51_RS16355 (WHU51_16355) rplW 3098388..3098690 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  WHU51_RS16360 (WHU51_16360) rplD 3098687..3099292 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  WHU51_RS16365 (WHU51_16365) rplC 3099303..3099932 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  WHU51_RS16370 (WHU51_16370) rpsJ 3099965..3100276 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  WHU51_RS16375 (WHU51_16375) pilD 3100655..3101122 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  WHU51_RS16380 (WHU51_16380) bfr 3101119..3101595 (-) 477 WP_000675515.1 bacterioferritin -
  WHU51_RS16385 (WHU51_16385) bfd 3101668..3101862 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WHU51_RS16390 (WHU51_16390) tuf 3102045..3103229 (-) 1185 WP_000031783.1 elongation factor Tu -
  WHU51_RS16395 (WHU51_16395) fusA 3103300..3105414 (-) 2115 WP_000124700.1 elongation factor G -
  WHU51_RS16400 (WHU51_16400) rpsG 3105511..3105981 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=869910 WHU51_RS16375 WP_000339836.1 3100655..3101122(+) (pilD) [Escherichia coli strain Z1323MEC0002]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=869910 WHU51_RS16375 WP_000339836.1 3100655..3101122(+) (pilD) [Escherichia coli strain Z1323MEC0002]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361