Detailed information NTG0869598

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: RA177_RS12345
• Genome accession: NZ_CP132599
• Coordinates: 2428476..2430860 (-)
• Length: 794 a.a.
• NCBI ID: WP_024423121.1
• Uniprot ID: -
• Organism: Bacillus safensis strain PL23A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2423476..2435860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RA177_RS12310 (RA177_12325)	-	2424439..2425167 (+)	729	WP_024423116.1	amino acid ABC transporter ATP-binding protein	-
RA177_RS12315 (RA177_12330)	-	2425181..2425990 (+)	810	WP_025092422.1	transporter substrate-binding domain-containing protein	-
RA177_RS12320 (RA177_12335)	-	2426068..2426721 (+)	654	WP_039180271.1	amino acid ABC transporter permease	-
RA177_RS12325 (RA177_12340)	-	2426737..2427387 (+)	651	WP_059374669.1	amino acid ABC transporter permease	-
RA177_RS12330 (RA177_12345)	-	2427490..2427621 (-)	132	WP_003216198.1	YrzQ family protein	-
RA177_RS12335 (RA177_12350)	-	2427642..2427833 (-)	192	WP_003216308.1	hypothetical protein	-
RA177_RS12340 (RA177_12355)	-	2427847..2428365 (-)	519	WP_051582016.1	PRC-barrel domain-containing protein	-
RA177_RS12345 (RA177_12360)	recD2	2428476..2430860 (-)	2385	WP_024423121.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RA177_RS12350 (RA177_12365)	-	2430880..2431533 (-)	654	WP_056767976.1	lipopolysaccharide assembly protein LapB	-
RA177_RS12355 (RA177_12370)	mnmA	2431593..2432711 (-)	1119	WP_024423123.1	tRNA 2-thiouridine(34) synthase MnmA	-
RA177_RS12360 (RA177_12375)	-	2432806..2433948 (-)	1143	WP_024423124.1	cysteine desulfurase family protein	-
RA177_RS12365 (RA177_12380)	cymR	2433967..2434386 (-)	420	WP_024423125.1	cysteine metabolism transcriptional regulator CymR	-
RA177_RS12370 (RA177_12385)	-	2434595..2435860 (+)	1266	WP_185853724.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89073.59 Da
• Isoelectric Point: 5.2068

>NTDB_id=869598 RA177_RS12345 WP_024423121.1 2428476..2430860(-) (recD2) [Bacillus safensis strain PL23A]
MQEHPDQMKLEDEPFLKGTIQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKEMIIEDDRCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASKAVPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSADQMKEVI
EKVVSNAAQKGFSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEQIMDAELEALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=869598 RA177_RS12345 WP_024423121.1 2428476..2430860(-) (recD2) [Bacillus safensis strain PL23A]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACCATTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAGGAAACCTACACCTTTTATGGCAAAGTGACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCGACTCATTTTCAAAAGGAAGTGCCGACAACGAAGCAAGGAATCATACATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGGAAAAAGACCGCTGAAGAAATCGTGGGGCAGCTTGGCAATCAGACGCTTCATAAGATTATGCGTGACC
CAGCTGTTTTGTATGATGTACCGCGCTTATCAAAAAAGAAGGCGGATAAGCTTGCCGCAGCGCTTCAGGAGCATCAAGGG
CTGGAACAAATCATGATCAGCCTGAATCAGTATGGCTTTGGTCCGCAGCTCAGCATGAAGATTTACCAAGTATACGAGAG
TGAAACGCTGCAGAAAATCGAGGAAAATCCCTATCAGCTCGTTAAGGATGTTGAGGGAATCGGATTTATTAAGGCGGATG
AGCTTGGGGCTAGAACAGGCATCTCAGGAAATGACCCAGAACGGATTCGCGCCGCCTTGCTATATACAGTGGAGACAGCC
AGTCTACAGGACGGTCATACGTACATACAAACGAAAGATTTGATCGTCGAAACCCGCAAGCTGCTCAACCAAACCGGCAA
TGATTACAAAGTGACTGAAATGGATGTTGCCAATCAGATCATTGCACTTGGCGAAGGAAAAGAAATGATCATTGAAGATG
ACCGCTGCTATCATCCATCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGCATTCAAAAAATCGTCTCCCAAACAGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTGCTGGCACTTGGCGAGTTGGAGGAGCGGTTAGGCGTCCAATATGCACC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGGCCTGGAACAGGGAAGACGA
CGGTCATTAAAGGAATTGTCGAGCTTTACAGTGATCTTCACGGTGTTTCTCTTGATCCGAGTGATTATAAAAAAGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGACGGGCGGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTGAC
CATTCACCGGCTGCTAGGCTGGAATGGTTCGGAGGGCTTCTCTCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TTATTGATGAATCAAGTATGCTGGATATTTGGCTGGCGAATCATTTATTTAAAGCGATTCCTGATCATATCCAAGTGATT
ATGGTAGGGGATGAACATCAGCTGCCATCTGTCGGACCAGGCCAAGTTTTACGGGATTTGCTTGCCTCAAAAGCCGTGCC
GGCTGTTACCCTGACAGATATTTACCGGCAGGCAGACGGCTCAACCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TGCTGCCAAAGGATATCACTGCACGCTCAAAGGATCGGTCCTTCATTCAGTGTTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTTGTCAGCAATGCTGCTCAAAAAGGGTTTTCGGCAAAGGATATTCAAGTGCTGGCACCGATGTATAAAGGAAA
AGCAGGCATCAATGAGCTCAACAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGGGAAATCCCGTTTG
GTGATGTGGTGTACCGGACAGGTGATAAGGTGCTTCAGCTTGTGAATCAGCCGGAGAACAACATTTTTAACGGCGATATC
GGTGAAATTGTCTCGATTTTTTATGCAAAAGAAAATACAGAAAAAGAAGACATGGCTGTGATCTCTTTTGATGGAAATGA
AATCACCTTTACAAAAAAAGATTTTCATCAATTTACACATGCTTATTGCTGCTCTATTCACAAATCACAAGGAAGTGAAT
TCCCGATTGTTGTGCTGCCAGTCGTCAGGAGCTACTACCGAATGCTTCGGCGGAATCTGCTGTACACAGCCATTACACGC
AGTAAAAAGTTTTTAATACTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTGGTACAAACCGAACAAATCATGGATGCAGAACTTGAAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCATTTGATTTTATGCATGAGTAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.648	100	0.798