Detailed information NTG0086942

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: K6J99_RS08620
• Genome accession: NZ_AP024623
• Coordinates: 1658723..1659502 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain BEST3102
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1653723..1664502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J99_RS08600 (BsBEST3102_16260)	trmFO	1654416..1655723 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
K6J99_RS08605 (BsBEST3102_16270)	xerC	1655791..1656705 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
K6J99_RS08610 (BsBEST3102_16280)	clpQ	1656718..1657263 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
K6J99_RS08615 (BsBEST3102_16290)	hslU	1657280..1658683 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
K6J99_RS08620 (BsBEST3102_16300)	codY	1658723..1659502 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
K6J99_RS08625 (BsBEST3102_16310)	flgB	1659882..1660271 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
K6J99_RS08630 (BsBEST3102_16320)	flgC	1660271..1660723 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
K6J99_RS08635 (BsBEST3102_16330)	fliE	1660734..1661054 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
K6J99_RS08640 (BsBEST3102_16340)	fliF	1661100..1662710 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
K6J99_RS08645 (BsBEST3102_16350)	fliG	1662723..1663739 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
K6J99_RS08650 (BsBEST3102_16360)	fliH	1663732..1664484 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=86942 K6J99_RS08620 WP_003220850.1 1658723..1659502(+) (codY) [Bacillus subtilis strain BEST3102]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=86942 K6J99_RS08620 WP_003220850.1 1658723..1659502(+) (codY) [Bacillus subtilis strain BEST3102]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467