Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WHU52_RS09090 Genome accession   NZ_CP148268
Coordinates   1845534..1846001 (+) Length   155 a.a.
NCBI ID   WP_000340163.1    Uniprot ID   -
Organism   Escherichia coli strain Z1323PEC0014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1840534..1851001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHU52_RS09045 (WHU52_09045) rplP 1840644..1841054 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  WHU52_RS09050 (WHU52_09050) rpsC 1841067..1841768 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  WHU52_RS09055 (WHU52_09055) rplV 1841786..1842118 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  WHU52_RS09060 (WHU52_09060) rpsS 1842133..1842411 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  WHU52_RS09065 (WHU52_09065) rplB 1842428..1843249 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  WHU52_RS09070 (WHU52_09070) rplW 1843267..1843569 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  WHU52_RS09075 (WHU52_09075) rplD 1843566..1844171 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  WHU52_RS09080 (WHU52_09080) rplC 1844182..1844811 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  WHU52_RS09085 (WHU52_09085) rpsJ 1844844..1845155 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  WHU52_RS09090 (WHU52_09090) pilD 1845534..1846001 (+) 468 WP_000340163.1 A24 family peptidase Machinery gene
  WHU52_RS09095 (WHU52_09095) bfr 1845998..1846474 (-) 477 WP_000675515.1 bacterioferritin -
  WHU52_RS09100 (WHU52_09100) bfd 1846547..1846741 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WHU52_RS09105 (WHU52_09105) tuf 1846924..1848108 (-) 1185 WP_000031783.1 elongation factor Tu -
  WHU52_RS09110 (WHU52_09110) fusA 1848179..1850293 (-) 2115 WP_000124700.1 elongation factor G -
  WHU52_RS09115 (WHU52_09115) rpsG 1850390..1850860 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17079.25 Da        Isoelectric Point: 8.1216

>NTDB_id=869418 WHU52_RS09090 WP_000340163.1 1845534..1846001(+) (pilD) [Escherichia coli strain Z1323PEC0014]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCYPDGLADALWGAIIGYSTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTLLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=869418 WHU52_RS09090 WP_000340163.1 1845534..1846001(+) (pilD) [Escherichia coli strain Z1323PEC0014]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTACCAGGTTTGTTATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACAGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTATTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCCTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CATTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTTGGCTGGGATAGTTTGCTGGCCGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368