Detailed information NTG0869389

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: RAL98_RS09725
• Genome accession: NZ_CP132544
• Coordinates: 1939249..1941660 (-)
• Length: 803 a.a.
• NCBI ID: WP_251520282.1
• Uniprot ID: -
• Organism: Staphylococcus sp. HKU1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1934249..1946660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAL98_RS09705 (RAL98_09675)	-	1935210..1935533 (-)	324	WP_251520295.1	DUF1292 domain-containing protein	-
RAL98_RS09710 (RAL98_09680)	ruvX	1935549..1935977 (-)	429	WP_251520291.1	Holliday junction resolvase RuvX	-
RAL98_RS09715 (RAL98_09685)	-	1935980..1936240 (-)	261	WP_418128703.1	IreB family regulatory phosphoprotein	-
RAL98_RS09720 (RAL98_09690)	alaS	1936307..1938937 (-)	2631	WP_418128705.1	alanine--tRNA ligase	-
RAL98_RS09725 (RAL98_09695)	recD2	1939249..1941660 (-)	2412	WP_251520282.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RAL98_RS09730 (RAL98_09700)	-	1941664..1942329 (-)	666	WP_251942841.1	tetratricopeptide repeat protein	-
RAL98_RS09735 (RAL98_09705)	mnmA	1942485..1943597 (-)	1113	WP_251520277.1	tRNA 2-thiouridine(34) synthase MnmA	-
RAL98_RS09740 (RAL98_09710)	-	1943598..1944740 (-)	1143	WP_418128708.1	cysteine desulfurase family protein	-
RAL98_RS09745 (RAL98_09715)	sal	1944801..1946432 (-)	1632	WP_251520271.1	Sal family ABC-F type ribosomal protection protein	-

Sequence

Protein

• Length: 803 a.a.
• Molecular weight: 90486.93 Da
• Isoelectric Point: 4.4465

>NTDB_id=869389 RAL98_RS09725 WP_251520282.1 1939249..1941660(-) (recD2) [Staphylococcus sp. HKU1]
MDDPTLFTQSMIKGTVDAILFQNKDNFYTVLKVDTIESDESFDSMPTIVGFFPDVTEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSELFKGIGKKTAQNIVNTIGENAINDILNNPEVLERVPGLSKKKQKQIADQIASNQETEQII
VRLHDLGFGPKLAMSIYQAYLGETLNIVENKPYQLVYDVRGIGFNKADALARKLGIHFNDVERIKAGLLYVLEEECVKQG
HTYLPKAYTLETTQDMLSNEPSEIIEIEDLAQVVDDLVQNDQLILQQDELAIPSLYYSELKSVQNLYRNYSYTQKLTEIE
QSDVLMEIGEIEDYNKVSYAASQKDALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAQIHDLSLNYDDYQNNDYPVVLG
APTGRASKRLADATGLEAMTIHRLIGWNQDTQPEDLLENEINAKLIIIDEMSMVDTWLFHQFMNAVPLDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGQDIDITQRFHDRSFINCSTEQIPNFVEKVVASAV
KKGYDMSDIQVLAPMYKGAAGIKKLNVILQDILNPKEKDSREITFGEVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AQENDLNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKAQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFEIGLKTHGQTRMTHLCTFLKAYFNNEEIEPKLSTANTGDSDEEENEDASLVLTEETIFKINPMINMGQITPYDF
VED

Nucleotide

• Length: 2412 bp

>NTDB_id=869389 RAL98_RS09725 WP_251520282.1 1939249..1941660(-) (recD2) [Staphylococcus sp. HKU1]
ATGGATGACCCTACATTATTTACACAGTCGATGATCAAAGGGACTGTTGACGCCATACTTTTTCAAAATAAAGACAACTT
TTATACCGTGTTGAAAGTCGACACGATTGAGTCAGACGAGTCATTTGATTCTATGCCGACGATTGTAGGGTTCTTTCCAG
ATGTTACTGAAGGAGATGTCTATACTTTCAAAGGTCAAGTTGTTACACACCCTAAATACGGTAAACAATTAAAAGCTGAA
ACATTTGAAAAAGAATTGCCACAAACTAAAGAAGCTATCATCAGTTACTTATCCAGTGAATTATTTAAAGGTATCGGTAA
AAAAACAGCGCAAAATATTGTAAATACGATTGGCGAAAATGCAATCAACGACATTTTAAACAACCCAGAAGTATTAGAGC
GCGTTCCAGGTTTATCTAAAAAGAAACAAAAGCAAATTGCCGATCAAATTGCTAGTAATCAGGAAACTGAACAAATTATC
GTAAGATTACATGACCTTGGATTTGGTCCGAAATTAGCGATGTCCATTTATCAAGCTTATTTAGGTGAAACACTTAATAT
TGTTGAGAACAAACCCTATCAACTTGTTTATGATGTGCGTGGTATAGGTTTTAATAAAGCAGATGCACTAGCGAGAAAGT
TAGGCATTCACTTTAATGATGTAGAAAGAATTAAAGCAGGGTTACTATACGTATTAGAAGAAGAATGTGTAAAACAAGGA
CATACCTATTTACCGAAAGCATATACACTTGAAACAACACAAGACATGTTATCTAATGAACCTTCCGAAATAATTGAAAT
AGAAGATTTAGCTCAGGTAGTTGATGATTTGGTGCAAAATGATCAGTTGATTCTACAACAAGATGAGTTAGCGATACCTA
GTTTATATTACTCAGAATTAAAAAGTGTACAAAATCTTTATCGAAATTATAGTTATACTCAAAAGTTAACCGAGATAGAA
CAATCGGATGTATTGATGGAAATTGGAGAGATTGAGGATTATAACAAAGTTTCGTATGCTGCATCACAAAAGGACGCATT
ACAAACTGCTATCAATTCAAAGGTGATGTTATTAACCGGGGGACCTGGTACTGGTAAGACTACTGTTATCAAAGGTATCG
TAGAATTATATGCACAAATTCATGATTTATCACTAAATTACGATGATTATCAGAATAACGACTATCCAGTCGTTTTAGGT
GCACCAACAGGTCGCGCTTCTAAACGTTTAGCCGATGCAACAGGATTAGAAGCGATGACCATTCATAGATTAATTGGTTG
GAATCAAGATACACAACCCGAAGATTTATTAGAGAATGAAATAAACGCAAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGTTGTTCCATCAATTTATGAACGCAGTACCTTTAGATGCTCAAATCATATTGGTAGGAGATGAAGATCAA
TTACCATCCGTAGGTCCTGGTCAAGTGTTTAAAGATTTAATAGATTCTAAAGTGATTCCTCGAGTAAATTTGACGGAGGT
ATATCGACAACAAGATGGCTCAAGTATTATAGAGTTAGCCCACCGAATGAAACTCGGTCAAGACATAGATATTACACAGC
GATTCCACGACCGAAGCTTTATTAATTGTTCAACAGAGCAAATACCTAACTTTGTAGAAAAGGTTGTCGCAAGTGCTGTG
AAGAAAGGTTACGATATGAGTGATATCCAAGTGTTAGCACCAATGTATAAAGGTGCTGCAGGTATTAAAAAGCTCAATGT
AATCTTACAAGATATTTTAAATCCAAAGGAAAAAGATTCAAGAGAAATCACTTTTGGAGAGGTTGTTTTTAGAAAAGGCG
ATAAAGTTCTGCAACTTGTGAATCGCCCGAGTGATAATATCTTTAATGGCGACATTGGCGTTATCGTCGGTATATTTTGG
GCTCAAGAAAATGACTTAAATAAAGATGTGTTAGTCGTGGATTTCGAAGGTAATGAAATCACATTTACGAAACAAGATTT
GATGGAACTCACACATGCTTATTGCACTTCAATTCACAAAGCACAAGGTTCAGAGTTTCCTATCGTTATTATGCCGATGG
TTAAACAATATTTTAGAATGTTACAAAAGCCTATTCTATATACAGGGCTTACACGAGCAAAGCAATCCTTAGTGTTTTTA
GGCGATCCTCAAGCTTTTGAAATAGGCTTGAAGACGCACGGTCAAACGAGAATGACTCATCTGTGTACATTTTTAAAGGC
ATACTTTAATAATGAAGAAATAGAACCTAAACTTTCAACAGCTAACACGGGCGATTCAGACGAAGAAGAGAATGAAGATG
CATCGCTCGTATTAACTGAAGAAACGATATTTAAAATTAATCCTATGATTAATATGGGACAAATTACGCCTTATGACTTT
GTTGAAGATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• Helix-hairpin-helix domain (HHH_5) (103-149)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.075	100	0.496