Detailed information NTG0868756

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAM05_RS01310
• Genome accession: NZ_CP132375
• Coordinates: 294063..295358 (-)
• Length: 431 a.a.
• NCBI ID: WP_025331787.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain wkB9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 289063..300358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAM05_RS01295 (RAM05_01295)	-	290451..292148 (+)	1698	WP_025331784.1	McrB family protein	-
RAM05_RS01300 (RAM05_01300)	-	292162..293274 (+)	1113	WP_025331785.1	hypothetical protein	-
RAM05_RS01305 (RAM05_01305)	-	293309..293842 (-)	534	WP_025331786.1	hypothetical protein	-
RAM05_RS01310 (RAM05_01310)	pilA	294063..295358 (-)	1296	WP_025331787.1	signal recognition particle-docking protein FtsY	Machinery gene
RAM05_RS01315 (RAM05_01315)	-	295574..296188 (-)	615	WP_038649093.1	Type 1 glutamine amidotransferase-like domain-containing protein	-
RAM05_RS01320 (RAM05_01320)	-	296233..296784 (-)	552	WP_038649096.1	5'-3'-deoxyribonucleotidase	-
RAM05_RS01325 (RAM05_01325)	ruvA	296828..297409 (-)	582	WP_025331789.1	Holliday junction branch migration protein RuvA	-
RAM05_RS01330 (RAM05_01330)	-	297487..298236 (-)	750	WP_269146745.1	septal ring lytic transglycosylase RlpA family protein	-
RAM05_RS01335 (RAM05_01335)	-	298563..299273 (-)	711	WP_232335960.1	ComF family protein	-
RAM05_RS01340 (RAM05_01340)	bioH	299272..300024 (+)	753	WP_025331791.1	pimeloyl-ACP methyl ester esterase BioH	-

Sequence

Protein

• Length: 431 a.a.
• Molecular weight: 46157.41 Da
• Isoelectric Point: 4.4535

>NTDB_id=868756 RAM05_RS01310 WP_025331787.1 294063..295358(-) (pilA) [Snodgrassella alvi strain wkB9]
MFGFFKRKKNTEPVAEQPVPAPHQQENSEQLQNIADDSAQAEVIPQPEPAISDPVAEKTEQADTASVQPQAETEQDIIVP
TAVDEPAAIAVTDDTASSVQTPVATENTVVIAAEPDTVSEQTEKPAKLSWTARLKQGLSKSRNQMAKSLASVFGGGKIDE
DLYEELETVLLTSDMGIEATEKLLAQVRQRVTLKGLKNGDELRSALKEALYELLLPLDQPLILPDDKKPFVIMMAGVNGA
GKTTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQASGDSAAVCYDALEAAKARGIDVVLADTAG
RLPTQLHLMEEIKKVKRVLQKSLPDAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRP
VPVRFIGVGEGIDDLRPFDARAFVDALIEDE

Nucleotide

• Length: 1296 bp

>NTDB_id=868756 RAM05_RS01310 WP_025331787.1 294063..295358(-) (pilA) [Snodgrassella alvi strain wkB9]
ATGTTTGGATTTTTTAAACGAAAAAAAAATACTGAGCCAGTTGCTGAACAGCCCGTACCGGCCCCTCACCAGCAGGAAAA
CTCAGAACAATTACAGAATATAGCTGATGATTCTGCTCAGGCTGAAGTAATACCGCAGCCTGAACCGGCTATCAGTGATC
CTGTTGCAGAAAAAACTGAGCAGGCCGACACCGCTTCTGTTCAACCTCAGGCCGAAACGGAACAAGATATTATTGTACCC
ACAGCAGTAGATGAACCGGCAGCCATTGCTGTAACAGACGATACTGCCTCATCAGTTCAGACACCTGTCGCTACTGAAAA
CACAGTTGTGATAGCTGCTGAGCCGGATACAGTGAGTGAGCAGACAGAAAAACCGGCTAAACTGAGCTGGACTGCACGGC
TAAAACAGGGGCTGAGCAAATCCCGCAATCAAATGGCCAAATCTCTGGCTTCAGTGTTTGGCGGCGGTAAAATCGACGAA
GATTTGTATGAAGAACTGGAAACCGTATTGCTTACCAGTGATATGGGAATTGAAGCCACAGAAAAACTGCTGGCGCAGGT
GCGTCAGCGGGTTACCCTGAAAGGGCTGAAAAACGGAGATGAGCTGCGCAGTGCTCTGAAAGAAGCCCTGTATGAATTAC
TGTTGCCACTGGATCAGCCACTGATTTTACCGGATGATAAAAAGCCCTTTGTGATTATGATGGCTGGTGTGAACGGTGCC
GGTAAAACTACCAGTATCGGTAAACTGGCGAAATATTTTCAAAGTCAGGGTAAAAGCGTGCTGCTGGCTGCCGGTGATAC
CTTTCGTGCAGCAGCCCGCGAACAATTGCAGCAATGGGGTGAGCGCAATAATGTCACCGTGATTGCTCAGGCTTCCGGCG
ATTCAGCAGCAGTCTGTTATGATGCTCTGGAGGCGGCCAAAGCACGCGGTATTGATGTGGTACTGGCAGACACTGCCGGT
CGCCTGCCTACTCAGCTGCATCTGATGGAAGAAATCAAAAAAGTAAAACGCGTCCTGCAAAAATCCTTGCCTGATGCTCC
GCATGAAGTCATGCTGGTACTGGATGCCAATGTGGGTCAGAATGCCATCAATCAGGTTGTAGCCTTTGATGATGCGCTCG
GATTAACTGGTCTGATTGTTTCCAAACTGGATGGTACAGCCAAAGGCGGTATTCTCGCGGCACTGGCAGCCAAGCGACCG
GTTCCGGTACGCTTTATCGGCGTAGGTGAAGGTATTGATGATTTACGCCCGTTTGATGCCCGAGCATTTGTAGATGCATT
AATTGAGGATGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (229-428)

• SRP54-type protein, helical bundle domain (SRP54_N) (145-210)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.45	100	0.652