Detailed information NTG0086856

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: K6K01_RS08670
• Genome accession: NZ_AP024622
• Coordinates: 1669291..1670070 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain BEST3096
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1664291..1675070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6K01_RS08650 (BsBEST3096_16380)	trmFO	1664984..1666291 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
K6K01_RS08655 (BsBEST3096_16390)	xerC	1666359..1667273 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
K6K01_RS08660 (BsBEST3096_16400)	clpQ	1667286..1667831 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
K6K01_RS08665 (BsBEST3096_16410)	hslU	1667848..1669251 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
K6K01_RS08670 (BsBEST3096_16420)	codY	1669291..1670070 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
K6K01_RS08675 (BsBEST3096_16430)	flgB	1670450..1670839 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
K6K01_RS08680 (BsBEST3096_16440)	flgC	1670839..1671291 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
K6K01_RS08685 (BsBEST3096_16450)	fliE	1671302..1671622 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
K6K01_RS08690 (BsBEST3096_16460)	fliF	1671668..1673278 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
K6K01_RS08695 (BsBEST3096_16470)	fliG	1673291..1674307 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
K6K01_RS08700 (BsBEST3096_16480)	fliH	1674300..1675052 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=86856 K6K01_RS08670 WP_003220850.1 1669291..1670070(+) (codY) [Bacillus subtilis strain BEST3096]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=86856 K6K01_RS08670 WP_003220850.1 1669291..1670070(+) (codY) [Bacillus subtilis strain BEST3096]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467