Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QTL86_RS04470 Genome accession   NZ_CP132338
Coordinates   905142..906986 (+) Length   614 a.a.
NCBI ID   WP_410496634.1    Uniprot ID   -
Organism   Cellulosilyticum sp. ST5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 900142..911986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTL86_RS04445 (QTL86_04425) - 900435..900974 (+) 540 WP_410496631.1 hypothetical protein -
  QTL86_RS04450 (QTL86_04430) yidA 901078..901884 (+) 807 WP_127067033.1 sugar-phosphatase -
  QTL86_RS04455 (QTL86_04435) - 901960..902466 (+) 507 WP_013657568.1 GNAT family N-acetyltransferase -
  QTL86_RS04460 (QTL86_04440) - 902774..903397 (+) 624 WP_410496632.1 TetR/AcrR family transcriptional regulator -
  QTL86_RS04465 (QTL86_04445) - 903416..905149 (+) 1734 WP_410496633.1 ABC transporter ATP-binding protein -
  QTL86_RS04470 (QTL86_04450) rcrQ 905142..906986 (+) 1845 WP_410496634.1 ABC transporter ATP-binding protein Regulator
  QTL86_RS04475 (QTL86_04455) - 907080..908636 (-) 1557 WP_410496635.1 ABC-F family ATP-binding cassette domain-containing protein -
  QTL86_RS04480 (QTL86_04460) - 908870..909262 (+) 393 WP_410496636.1 hypothetical protein -
  QTL86_RS04485 (QTL86_04465) - 909306..910160 (-) 855 WP_190283355.1 PHP domain-containing protein -
  QTL86_RS04490 (QTL86_04470) - 910252..910656 (+) 405 WP_013657561.1 TIGR04086 family membrane protein -
  QTL86_RS04495 (QTL86_04475) scfA 910799..910936 (+) 138 WP_013657560.1 six-cysteine ranthipeptide SCIFF -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68192.02 Da        Isoelectric Point: 6.3281

>NTDB_id=868231 QTL86_RS04470 WP_410496634.1 905142..906986(+) (rcrQ) [Cellulosilyticum sp. ST5]
MSENKRPRGPMGGHGPMGGMSAGEKADDFKGTMKKLINYLKQYMVGIVVVMIFAIASTVFSIYGPSILGDATNVLVEGIM
AAVQTGQLVIDYTKIRNILLFLLGLYLLSAAFSYIQGWVMTGVSQKVTYKLRNDITEKINRMPLKYFDTHTHGEVLSRIT
NDVDTVSQTLGQSLTQIITSITMVIGVLIMMIRISWLMTLAALIVIPLSMFFVMGVVKKSQKYFRSQQEYLGHINGHVEE
MYGGHIVVKAFNGEEESMKQFNAYNETLYHSAWKSQFISGMMMPIMGFIGNLGYVLVCILGGVLAVKNTVSIGDIQAFIQ
YMRNFTQPLSQIASISNTLQSTAAAAERVFAFLEEEEESVESSTPVKLENPEGQVTFENVHFGYNPDKIIINDFSADVKP
GMKVAIVGPTGAGKTTVVKLLMRFYDLQSGKIKIDGHDICAFTRSDLRDLFGMVLQDTWLYNGSIMENIRYGKQDATDEE
VIEAAKAAHVHSFVKTLPDGYRMVLNEEASNVSQGQKQLLTIARAILSDPTILILDEATSSVDTRTEVLIQKAMENLMKG
RTSFIIAHRLSTIRDADLILVMKDGDIIEKGTHEELLKQGTFYAQLYNSQFEAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=868231 QTL86_RS04470 WP_410496634.1 905142..906986(+) (rcrQ) [Cellulosilyticum sp. ST5]
ATGAGTGAAAATAAAAGACCGAGAGGACCTATGGGTGGACATGGACCTATGGGTGGCATGAGTGCTGGTGAAAAAGCAGA
TGATTTTAAAGGCACCATGAAAAAATTAATCAACTATTTAAAGCAATATATGGTGGGAATTGTAGTGGTTATGATTTTTG
CTATTGCATCTACTGTCTTTTCTATTTATGGTCCTTCTATATTAGGAGATGCCACTAATGTTTTAGTAGAGGGCATTATG
GCTGCTGTGCAGACTGGTCAATTAGTGATTGACTACACTAAAATCCGTAATATTTTATTATTTTTACTAGGATTATATTT
GCTATCAGCAGCATTTAGTTACATTCAAGGCTGGGTAATGACAGGCGTTTCTCAAAAGGTAACTTATAAACTACGTAATG
ATATTACAGAAAAAATTAATCGTATGCCACTTAAATATTTTGATACACATACTCATGGTGAGGTACTTTCCCGTATTACA
AATGATGTAGATACAGTCAGTCAAACTTTGGGGCAAAGCTTAACTCAAATTATTACTTCTATAACTATGGTTATTGGTGT
ACTCATTATGATGATTCGAATTAGTTGGCTGATGACATTAGCAGCTTTAATAGTCATTCCACTTTCTATGTTCTTTGTGA
TGGGTGTGGTTAAAAAGTCACAAAAATACTTTAGAAGTCAACAAGAATACCTAGGTCATATTAATGGGCATGTAGAAGAA
ATGTATGGGGGGCATATTGTTGTTAAAGCGTTTAATGGAGAAGAAGAGTCCATGAAGCAGTTTAATGCATATAACGAAAC
TCTATATCATTCTGCGTGGAAATCACAGTTTATATCAGGCATGATGATGCCTATTATGGGCTTTATAGGTAATCTAGGCT
ATGTACTGGTGTGTATTTTAGGTGGTGTTTTAGCTGTTAAAAATACAGTAAGTATTGGTGATATTCAAGCCTTTATTCAA
TATATGCGTAACTTTACTCAGCCACTTTCACAAATTGCAAGTATTTCAAATACATTACAATCTACAGCAGCAGCTGCTGA
ACGTGTATTTGCCTTTTTAGAAGAGGAAGAAGAAAGTGTAGAAAGTAGTACGCCAGTGAAATTAGAAAATCCAGAAGGGC
AAGTCACCTTCGAAAATGTTCATTTTGGATACAATCCAGACAAAATCATTATTAATGATTTTTCAGCTGATGTTAAACCA
GGAATGAAGGTAGCTATTGTAGGGCCTACAGGTGCTGGTAAAACAACAGTCGTGAAGCTATTAATGCGCTTTTATGACTT
ACAATCTGGTAAGATTAAAATTGATGGTCATGATATTTGTGCCTTTACAAGAAGTGATTTAAGAGATTTATTTGGTATGG
TACTTCAAGACACGTGGTTGTATAATGGCAGCATTATGGAAAATATACGCTATGGTAAACAAGATGCTACGGATGAAGAA
GTCATTGAAGCAGCCAAAGCAGCTCATGTTCATAGTTTCGTAAAAACTTTACCTGATGGTTACCGCATGGTTTTAAATGA
AGAAGCAAGTAATGTTTCTCAAGGACAAAAGCAACTATTAACCATCGCACGTGCTATTTTATCAGACCCTACAATTCTTA
TTTTAGATGAAGCCACAAGCTCCGTTGATACACGTACAGAAGTGCTTATTCAAAAAGCTATGGAAAACTTAATGAAAGGA
AGAACCAGTTTTATTATTGCTCACCGTTTATCTACGATTCGTGATGCAGACCTTATTTTAGTAATGAAAGATGGTGATAT
TATTGAAAAAGGTACTCATGAAGAACTCTTAAAACAAGGTACTTTCTATGCACAACTTTATAATAGTCAATTTGAAGCTA
GCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(392-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.199

95.114

0.487