Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   Q8X41_RS06485 Genome accession   NZ_CP132291
Coordinates   1301333..1303678 (-) Length   781 a.a.
NCBI ID   WP_397539437.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296333..1308678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS06470 dtd 1297871..1298311 (-) 441 WP_397539434.1 D-aminoacyl-tRNA deacylase -
  Q8X41_RS06475 - 1298327..1300522 (-) 2196 WP_397539435.1 RelA/SpoT family protein -
  Q8X41_RS06480 - 1300818..1301330 (-) 513 WP_397539436.1 adenine phosphoribosyltransferase -
  Q8X41_RS06485 recJ 1301333..1303678 (-) 2346 WP_397539437.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  Q8X41_RS06490 - 1304224..1306152 (-) 1929 WP_397539438.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88431.64 Da        Isoelectric Point: 4.7491

>NTDB_id=868004 Q8X41_RS06485 WP_397539437.1 1301333..1303678(-) (recJ) [Rummeliibacillus pycnus strain X33]
MTATEKRWRINRPDEQLVKELQDGLKTSSITAKILVARGFNTVEAARDFLTIDENAIHDPFELHGMQEAVERINKAIQDK
EKILVYGDYDADGITSTTVMKTVLQDIGADVSHMIPNRFTDGYGPSERLFRQAHDEGFRLIITVDNGIAGNHEVQVAKDL
GMDVIITDHHEPGEILPPADVIIHPRHPEGHYPFGELAGVGVAFKVAHALYGEFPKHLVEIVAIGTIADLVPLLDENRYL
VKAGIEALQLSTRPAVKALCKVSGTNQQEINEETIGFGFAPRLNALGRLGDAAPGVDFLMAQDTNEAISMANYLNEQNKE
RQAIVTDITEQAIAMVENDEEIGNSQVLVIAEEGWNPGVVGIVASRLVEKYYRPTIILSIDVEKGTAKGSARSIEGFHMY
KELSKNKEILPAFGGHPMAAGMTLAMEDVDELRYRLDKQARESLTEEDLIPVLEVDIPLTMDEIDIEAIEDVRTLAPFGT
SFAKPMYAIEDASVQSMRKIGANEDHIKLQIGSNNQELDAVGFHKGYLVDELTYGIKVSFAGDLQINEWNGRKKPQLMLQ
DVKTDEWQLFDLRGIRQVARWLQTIPLEEVTFLAFREATISYYESLIPKEIHEFSENISNENCRPYVVLLDLPKNVQILE
SLLKCVKPTRIYAHFYMPDSHYFDGMPTREQFVWYYSFLRKRQIFHLRQHLTDLAKHKGWSRDMLIFMTQVFFELGFVTI
ENGLAKIVDDPPKKDLTSAKIYQERSQQMDLEQTLLYAPYKDLRDWFDLRLNGHTVSEEEQ

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=868004 Q8X41_RS06485 WP_397539437.1 1301333..1303678(-) (recJ) [Rummeliibacillus pycnus strain X33]
ATGACAGCGACTGAAAAAAGATGGCGTATTAATCGCCCAGATGAACAGCTTGTTAAAGAACTACAAGATGGACTTAAAAC
TTCATCAATTACAGCTAAAATTTTAGTAGCACGTGGTTTCAATACAGTTGAGGCTGCTCGTGATTTTTTAACGATTGACG
AAAATGCCATCCATGATCCATTTGAACTGCATGGCATGCAGGAAGCTGTTGAACGAATAAATAAAGCAATTCAAGATAAA
GAAAAAATACTAGTATATGGTGATTACGACGCCGATGGTATTACTAGCACGACAGTCATGAAAACCGTTTTACAAGACAT
TGGTGCAGATGTATCTCATATGATTCCTAATCGTTTTACAGATGGCTATGGTCCAAGCGAACGACTTTTTAGACAGGCAC
ATGATGAAGGTTTCCGACTCATTATTACAGTCGATAACGGTATTGCTGGTAATCATGAAGTTCAGGTTGCTAAAGATTTA
GGAATGGACGTTATCATTACAGATCACCATGAACCAGGTGAAATATTACCTCCTGCAGATGTTATTATTCATCCGAGACA
CCCAGAAGGGCATTATCCATTTGGCGAATTAGCGGGCGTTGGAGTTGCCTTTAAAGTAGCACATGCATTATATGGTGAAT
TTCCTAAACATCTAGTGGAAATCGTTGCAATAGGTACGATTGCTGATTTAGTACCACTACTAGACGAAAATCGTTATCTT
GTAAAAGCAGGAATTGAAGCATTACAACTTTCCACAAGACCTGCCGTTAAAGCATTATGTAAAGTATCTGGAACAAACCA
ACAAGAAATAAATGAAGAAACAATTGGCTTTGGCTTTGCGCCAAGACTAAATGCTCTAGGAAGACTTGGTGATGCAGCAC
CAGGTGTTGACTTCTTAATGGCTCAAGATACAAACGAAGCAATATCAATGGCGAATTACTTAAATGAACAGAATAAAGAA
CGCCAAGCCATCGTAACAGACATAACTGAACAAGCCATCGCTATGGTTGAAAATGATGAGGAAATTGGCAATTCACAAGT
ATTAGTCATTGCAGAAGAGGGTTGGAACCCAGGCGTAGTTGGAATTGTAGCATCGAGACTTGTAGAAAAATACTACCGCC
CAACAATTATCCTTTCGATAGATGTAGAAAAGGGTACTGCAAAAGGATCTGCTCGTAGTATTGAAGGTTTTCACATGTAC
AAGGAACTTTCAAAAAACAAAGAGATTTTGCCAGCATTCGGGGGACATCCAATGGCTGCGGGGATGACACTTGCAATGGA
AGATGTCGATGAATTGCGATATCGCTTGGATAAACAAGCCAGAGAGAGTTTAACAGAAGAAGATTTAATTCCTGTTTTAG
AAGTTGATATTCCACTTACTATGGATGAAATTGATATCGAAGCAATCGAAGATGTTCGTACATTAGCTCCGTTTGGTACT
AGTTTTGCAAAACCCATGTATGCTATTGAAGACGCCTCTGTTCAATCAATGCGCAAAATTGGAGCAAATGAGGATCATAT
TAAGCTACAAATAGGTTCAAATAATCAAGAATTAGATGCAGTAGGTTTTCATAAAGGCTATTTAGTAGATGAATTAACAT
ATGGTATCAAGGTGTCCTTTGCTGGAGATCTTCAAATCAATGAATGGAATGGTCGTAAAAAGCCGCAACTCATGCTACAA
GATGTCAAAACGGATGAATGGCAACTGTTTGACTTAAGAGGTATTCGTCAAGTAGCACGTTGGTTACAAACCATTCCTCT
TGAGGAAGTTACTTTTTTAGCCTTTAGAGAAGCAACAATTAGCTACTATGAATCTCTAATTCCGAAAGAAATCCACGAGT
TTTCGGAAAATATTTCAAATGAAAATTGTCGTCCATATGTCGTATTATTAGATTTGCCAAAGAATGTTCAAATACTAGAA
TCGCTATTAAAATGCGTAAAACCAACTCGAATATATGCACATTTTTATATGCCAGATTCTCACTATTTCGATGGTATGCC
TACACGAGAGCAGTTTGTGTGGTATTATTCATTTTTGAGAAAAAGACAGATTTTTCACTTGCGCCAGCATTTAACTGATT
TAGCAAAACATAAAGGCTGGAGCCGCGATATGCTTATTTTCATGACACAGGTGTTTTTTGAACTTGGATTTGTTACAATA
GAAAATGGACTCGCGAAAATTGTAGATGATCCGCCTAAAAAAGATTTAACAAGCGCTAAAATCTATCAAGAACGCTCGCA
ACAAATGGATTTAGAACAAACCCTATTGTATGCGCCATATAAGGATTTAAGAGATTGGTTTGACCTCCGTTTAAATGGTC
ATACAGTTTCTGAGGAGGAACAATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.032

99.232

0.487