Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Q8X41_RS06340 Genome accession   NZ_CP132291
Coordinates   1265275..1267752 (-) Length   825 a.a.
NCBI ID   WP_397539408.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1260275..1272752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS06315 - 1260680..1260973 (-) 294 WP_397539404.1 DUF1292 domain-containing protein -
  Q8X41_RS06320 - 1261007..1261297 (-) 291 WP_397539405.1 DUF1292 domain-containing protein -
  Q8X41_RS06325 ruvX 1261307..1261726 (-) 420 WP_397539406.1 Holliday junction resolvase RuvX -
  Q8X41_RS06330 - 1261726..1261995 (-) 270 WP_102691244.1 IreB family regulatory phosphoprotein -
  Q8X41_RS06335 alaS 1262070..1264733 (-) 2664 WP_397539407.1 alanine--tRNA ligase -
  Q8X41_RS06340 recD2 1265275..1267752 (-) 2478 WP_397539408.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q8X41_RS06345 - 1267772..1268431 (-) 660 WP_397539409.1 tetratricopeptide repeat protein -
  Q8X41_RS06350 mnmA 1268446..1269567 (-) 1122 WP_397539410.1 tRNA 2-thiouridine(34) synthase MnmA -
  Q8X41_RS06355 - 1269587..1270729 (-) 1143 WP_397539411.1 cysteine desulfurase family protein -
  Q8X41_RS06360 cymR 1270744..1271163 (-) 420 WP_397539412.1 cysteine metabolism transcriptional regulator CymR -
  Q8X41_RS06365 - 1271311..1272603 (+) 1293 WP_397539413.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 91980.61 Da        Isoelectric Point: 4.6445

>NTDB_id=868003 Q8X41_RS06340 WP_397539408.1 1265275..1267752(-) (recD2) [Rummeliibacillus pycnus strain X33]
MTENLSLFTDEQLFIVGRPVVTIFHNAQNLFSIVKLKIQETNTDYKEKEIIVTGYFPTVAEEALYRYTGQLKQHPKYGLQ
FQADTFEKEIPATETGVVQYLASDLFPGIGHRTAETIVKKLGPNAIKVIIENPDALDEIPRLTEDKKQTLRSVLEQNLGL
DRIMIQLNEWGFGAQIAVRIYQTYEGETLQILQKNPYRLIEDIEGIGFQRADELGARLHITGNHSDRIKASILHLLNVAA
LSEGHVFLDAKEIIPQAKKLLESSQLCTIDYDDISRCIIELGEDGKVCGEETRIYMPSLYYSEIGIATKITELAQKNEEH
SAFPSSEIRKRIGDAEERFGVSYAETQIEAIETAINSAVMILTGGPGTGKTTVVRGIVDVYAELHGLSLNPKEYAAKDED
FPIVLVAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEDSEREVAGRLIIVDEMSMVDTWLANQLLKALNDDCQVIFV
GDQDQLPPVGPGQVLKDLLASKAIPTVELKDVYRQSEGSSIIELAHQMKQGEIPQDLTAKTSDRSFIRAGQEQIADVVGQ
VVKSAVKKGFSIHDVQVLAPMYRGNAGIDAMNKMLQELINPKASEKTKEIAFGDTTYRIGDKVLQLVNQPNNNVFNGDMG
EVISIIKAKETVEKTDLLVVSFDGIEVTYQKGDLNQLTLAYCCSIHKSQGSEFPMVIMPIVRSYSKMLRKNLLYTGITRA
KNFLILCGEPDTFIYGFQRTDDLQRHTSLSDRLNNDQPEAETTKVDEENSDGISSKSEEEQLMQETSVEVNDGEPAKLTV
ENVNFIHPMIGMKGISPYDFMVNEN

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=868003 Q8X41_RS06340 WP_397539408.1 1265275..1267752(-) (recD2) [Rummeliibacillus pycnus strain X33]
TTGACTGAAAATTTATCATTATTTACAGACGAACAGCTTTTTATCGTCGGTCGACCTGTCGTCACTATTTTTCATAACGC
TCAAAATTTATTTTCAATTGTGAAATTGAAAATTCAAGAGACGAATACAGATTACAAAGAAAAAGAGATCATCGTTACAG
GTTATTTTCCAACAGTTGCTGAAGAGGCTTTATATCGCTATACAGGTCAATTAAAGCAACATCCAAAATACGGCCTACAG
TTTCAAGCTGATACTTTTGAAAAAGAGATTCCAGCCACTGAAACTGGGGTCGTTCAATATTTAGCTAGTGATTTATTTCC
AGGTATCGGTCATCGTACTGCCGAGACCATTGTGAAAAAGCTAGGTCCTAATGCGATTAAAGTGATTATCGAAAATCCTG
ATGCTTTAGATGAAATTCCACGATTAACAGAAGACAAAAAGCAAACCCTTCGCTCTGTGCTCGAACAAAACCTCGGACTT
GATCGCATTATGATTCAACTAAATGAGTGGGGATTTGGTGCTCAAATTGCAGTTCGAATCTATCAAACATATGAAGGCGA
AACACTCCAAATATTACAGAAGAATCCGTACCGTTTAATTGAAGATATTGAAGGTATTGGCTTCCAACGTGCAGATGAGC
TAGGGGCAAGATTACATATAACAGGTAATCACTCAGATCGTATAAAAGCATCTATCTTGCATCTTTTAAATGTTGCCGCA
TTATCAGAAGGGCATGTATTTTTAGATGCAAAAGAAATTATCCCGCAAGCGAAAAAACTATTAGAATCCAGTCAACTATG
CACTATTGATTATGATGATATTTCCAGATGTATTATTGAGCTAGGTGAAGACGGCAAAGTGTGTGGAGAAGAGACAAGAA
TTTATATGCCTTCTCTCTACTATTCAGAAATAGGTATTGCAACTAAAATCACTGAACTTGCACAAAAAAACGAAGAACAT
TCTGCGTTCCCGTCATCCGAAATCCGTAAAAGAATAGGTGATGCTGAGGAACGTTTTGGTGTTTCATATGCTGAAACGCA
AATTGAAGCAATCGAAACAGCGATTAATTCAGCTGTTATGATTTTAACAGGTGGTCCTGGTACTGGTAAAACAACAGTTG
TTCGAGGAATTGTTGATGTATACGCAGAATTACATGGGCTATCTCTTAATCCAAAAGAATATGCTGCTAAAGACGAAGAC
TTCCCAATTGTTTTAGTAGCACCTACAGGTCGTGCAGCAAAACGACTAAGTGAATCGACGGAATTACCAGCAATGACAAT
ACATCGTTTGCTGGGCTTTACCGGTCAAGAAAAAGAAGAGGATTCGGAACGTGAAGTAGCGGGCCGTCTGATTATTGTCG
ATGAAATGTCAATGGTAGATACTTGGCTTGCCAATCAATTATTGAAGGCATTAAACGATGATTGCCAAGTGATATTTGTA
GGAGACCAAGATCAATTGCCACCAGTAGGCCCAGGACAAGTGCTTAAAGATTTACTCGCATCAAAAGCGATCCCAACTGT
AGAGTTGAAGGATGTATACCGTCAATCTGAAGGATCTTCTATTATTGAATTGGCCCATCAGATGAAACAAGGTGAAATAC
CTCAAGATCTAACTGCTAAAACGAGCGACCGTTCTTTTATCCGTGCAGGGCAAGAACAAATTGCAGATGTTGTTGGTCAA
GTTGTAAAAAGTGCGGTCAAAAAAGGCTTCTCGATTCATGATGTGCAAGTATTAGCACCAATGTACCGAGGAAATGCTGG
TATTGATGCAATGAACAAAATGTTGCAGGAGCTTATTAATCCAAAAGCAAGTGAAAAGACTAAAGAGATTGCATTTGGTG
ACACAACTTATCGTATAGGAGATAAAGTTTTACAACTTGTCAATCAGCCGAATAATAATGTCTTTAACGGAGATATGGGT
GAAGTTATTTCTATCATTAAGGCAAAGGAAACAGTTGAAAAAACAGATTTACTAGTCGTTTCTTTTGACGGTATTGAAGT
GACTTACCAAAAAGGTGACTTAAATCAGCTAACTCTTGCTTACTGTTGTTCGATTCATAAATCACAAGGTAGCGAGTTCC
CTATGGTTATAATGCCGATTGTTCGCAGTTATTCAAAAATGCTTCGAAAGAATTTACTTTATACAGGCATTACGCGCGCG
AAGAATTTTCTTATACTTTGCGGAGAACCGGATACTTTTATTTATGGATTTCAACGAACAGATGATTTACAGAGACATAC
AAGTCTTTCAGATCGTTTAAATAATGATCAACCGGAAGCTGAAACGACAAAAGTTGATGAAGAAAATAGTGATGGAATTT
CTTCAAAATCAGAAGAAGAACAATTAATGCAAGAAACTTCAGTAGAAGTTAACGATGGTGAGCCAGCAAAACTAACCGTA
GAAAACGTCAATTTCATTCATCCTATGATTGGTATGAAAGGGATTAGCCCATACGACTTTATGGTGAATGAGAATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.445

99.152

0.52