Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   Q9317_RS06260 Genome accession   NZ_CP132230
Coordinates   1264798..1265661 (-) Length   287 a.a.
NCBI ID   WP_305981528.1    Uniprot ID   -
Organism   Streptococcus iniae strain BH15-2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1259798..1270661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9317_RS06240 (Q9317_06240) - 1260052..1260432 (-) 381 WP_003099988.1 OsmC family protein -
  Q9317_RS06245 (Q9317_06245) pheT 1260505..1262910 (-) 2406 WP_003099989.1 phenylalanine--tRNA ligase subunit beta -
  Q9317_RS06250 (Q9317_06250) - 1262926..1263450 (-) 525 WP_003099991.1 N-acetyltransferase -
  Q9317_RS06255 (Q9317_06255) pheS 1263463..1264506 (-) 1044 WP_003099992.1 phenylalanine--tRNA ligase subunit alpha -
  Q9317_RS06260 (Q9317_06260) endA 1264798..1265661 (-) 864 WP_305981528.1 DNA/RNA non-specific endonuclease Machinery gene
  Q9317_RS06265 (Q9317_06265) - 1265692..1265880 (-) 189 WP_003099995.1 DNA-directed RNA polymerase subunit beta -
  Q9317_RS06270 (Q9317_06270) murA 1265884..1267155 (-) 1272 WP_003099997.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q9317_RS06275 (Q9317_06275) - 1267221..1267457 (-) 237 WP_071794729.1 DUF1146 family protein -
  Q9317_RS06280 (Q9317_06280) - 1267533..1267949 (-) 417 WP_003100001.1 F0F1 ATP synthase subunit epsilon -
  Q9317_RS06285 (Q9317_06285) atpD 1267962..1269368 (-) 1407 WP_305981529.1 F0F1 ATP synthase subunit beta -
  Q9317_RS06290 (Q9317_06290) - 1269484..1270359 (-) 876 WP_003100004.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31791.45 Da        Isoelectric Point: 9.3608

>NTDB_id=867888 Q9317_RS06260 WP_305981528.1 1264798..1265661(-) (endA) [Streptococcus iniae strain BH15-2]
MSPKTKQSQKINLLLFLLVLVGLFYLIDSKEGEENNPIRAFYQSVMGASNQTSQKESSNPDTPSYALASSVLTEKVKRQL
GSKVEWNGNGAFVINDNSTNLDAKVYSAPYAHNQTRLLSGKKLPTVANALLAKSTRQYRDRNETGNGYSYWKPAGWHQIH
GLSGKYDHAVDRGHLLGYALVGGLKGFDASTSNSDNIATQLSWANQAMDSDSTGQNYYETKIRRALDKNKRVRYRVTLIY
EADNILASGSHLEAKSDDGSLEFNVFVPNVQKGLEVDYQTGQITVSH

Nucleotide


Download         Length: 864 bp        

>NTDB_id=867888 Q9317_RS06260 WP_305981528.1 1264798..1265661(-) (endA) [Streptococcus iniae strain BH15-2]
ATGTCACCAAAGACAAAACAAAGTCAAAAAATCAATCTATTATTGTTTCTGCTTGTGCTCGTTGGCTTATTCTATTTGAT
TGATAGTAAAGAAGGGGAAGAGAATAATCCTATTCGAGCCTTTTATCAATCAGTGATGGGAGCTTCCAATCAAACTAGCC
AAAAAGAATCAAGCAATCCTGATACACCAAGTTATGCCTTGGCATCTTCGGTTTTAACAGAAAAAGTAAAAAGACAACTT
GGTTCGAAAGTTGAGTGGAATGGTAATGGTGCATTTGTCATCAATGATAACAGTACCAATTTGGATGCAAAAGTATACAG
TGCTCCCTATGCTCACAATCAAACCAGACTCTTATCAGGGAAAAAGCTTCCAACAGTCGCCAATGCTTTACTTGCCAAAT
CAACAAGGCAATACCGAGACCGAAACGAGACCGGAAATGGCTACTCTTATTGGAAACCTGCTGGTTGGCACCAGATTCAT
GGTTTATCAGGAAAATATGATCACGCTGTGGACCGTGGGCATTTATTAGGCTATGCTTTAGTGGGAGGTCTTAAAGGATT
TGATGCCTCTACAAGCAATAGCGATAACATAGCAACGCAATTATCCTGGGCTAACCAAGCGATGGATAGTGATTCCACTG
GCCAAAATTATTATGAAACAAAAATCAGACGTGCATTGGACAAGAATAAGCGTGTCCGTTACCGTGTTACCCTCATTTAC
GAGGCTGATAATATATTAGCAAGTGGAAGCCATTTAGAAGCAAAATCAGATGACGGCAGTTTAGAATTTAACGTTTTTGT
GCCAAATGTTCAAAAAGGTCTAGAAGTTGACTATCAAACAGGACAAATAACAGTCAGTCACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.136

82.23

0.519
  endA Streptococcus pneumoniae D39

63.136

82.23

0.519
  endA Streptococcus pneumoniae R6

63.136

82.23

0.519
  endA Streptococcus pneumoniae TIGR4

63.136

82.23

0.519