Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   Q9318_RS05320 Genome accession   NZ_CP132229
Coordinates   1059784..1060647 (+) Length   287 a.a.
NCBI ID   WP_305981528.1    Uniprot ID   -
Organism   Streptococcus iniae strain BH16-24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1054784..1065647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9318_RS05290 (Q9318_05290) - 1055086..1055961 (+) 876 WP_003100004.1 F0F1 ATP synthase subunit gamma -
  Q9318_RS05295 (Q9318_05295) atpD 1056077..1057483 (+) 1407 WP_003100002.1 F0F1 ATP synthase subunit beta -
  Q9318_RS05300 (Q9318_05300) - 1057496..1057912 (+) 417 WP_003100001.1 F0F1 ATP synthase subunit epsilon -
  Q9318_RS05305 (Q9318_05305) - 1057988..1058224 (+) 237 WP_071794729.1 DUF1146 family protein -
  Q9318_RS05310 (Q9318_05310) murA 1058290..1059561 (+) 1272 WP_003099997.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q9318_RS05315 (Q9318_05315) - 1059565..1059753 (+) 189 WP_003099995.1 DNA-directed RNA polymerase subunit beta -
  Q9318_RS05320 (Q9318_05320) endA 1059784..1060647 (+) 864 WP_305981528.1 DNA/RNA non-specific endonuclease Machinery gene
  Q9318_RS05325 (Q9318_05325) pheS 1060939..1061982 (+) 1044 WP_003099992.1 phenylalanine--tRNA ligase subunit alpha -
  Q9318_RS05330 (Q9318_05330) - 1061995..1062519 (+) 525 WP_003099991.1 N-acetyltransferase -
  Q9318_RS05335 (Q9318_05335) pheT 1062535..1064940 (+) 2406 WP_003099989.1 phenylalanine--tRNA ligase subunit beta -
  Q9318_RS05340 (Q9318_05340) - 1065013..1065393 (+) 381 WP_003099988.1 OsmC family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31791.45 Da        Isoelectric Point: 9.3608

>NTDB_id=867846 Q9318_RS05320 WP_305981528.1 1059784..1060647(+) (endA) [Streptococcus iniae strain BH16-24]
MSPKTKQSQKINLLLFLLVLVGLFYLIDSKEGEENNPIRAFYQSVMGASNQTSQKESSNPDTPSYALASSVLTEKVKRQL
GSKVEWNGNGAFVINDNSTNLDAKVYSAPYAHNQTRLLSGKKLPTVANALLAKSTRQYRDRNETGNGYSYWKPAGWHQIH
GLSGKYDHAVDRGHLLGYALVGGLKGFDASTSNSDNIATQLSWANQAMDSDSTGQNYYETKIRRALDKNKRVRYRVTLIY
EADNILASGSHLEAKSDDGSLEFNVFVPNVQKGLEVDYQTGQITVSH

Nucleotide


Download         Length: 864 bp        

>NTDB_id=867846 Q9318_RS05320 WP_305981528.1 1059784..1060647(+) (endA) [Streptococcus iniae strain BH16-24]
ATGTCACCAAAGACAAAACAAAGTCAAAAAATCAATCTATTATTGTTTCTGCTTGTGCTCGTTGGCTTATTCTATTTGAT
TGATAGTAAAGAAGGGGAAGAGAATAATCCTATTCGAGCCTTTTATCAATCAGTGATGGGAGCTTCCAATCAAACTAGCC
AAAAAGAATCAAGCAATCCTGATACACCAAGTTATGCCTTGGCATCTTCGGTTTTAACAGAAAAAGTAAAAAGACAACTT
GGTTCGAAAGTTGAGTGGAATGGTAATGGTGCATTTGTCATCAATGATAACAGTACCAATTTGGATGCAAAAGTATACAG
TGCTCCCTATGCTCACAATCAAACCAGACTCTTATCAGGGAAAAAGCTTCCAACAGTCGCCAATGCTTTACTTGCCAAAT
CAACAAGGCAATACCGAGACCGAAACGAGACCGGAAATGGCTACTCTTATTGGAAACCTGCTGGTTGGCACCAGATTCAT
GGTTTATCAGGAAAATATGATCACGCTGTGGACCGTGGGCATTTATTAGGCTATGCTTTAGTGGGAGGTCTTAAAGGATT
TGATGCCTCTACAAGCAATAGCGATAACATAGCAACGCAATTATCCTGGGCTAACCAAGCGATGGATAGTGATTCCACTG
GCCAAAATTATTATGAAACAAAAATCAGACGTGCATTGGACAAGAATAAGCGTGTCCGTTACCGTGTTACCCTCATTTAC
GAGGCTGATAATATATTAGCAAGTGGAAGCCATTTAGAAGCAAAATCAGATGACGGCAGTTTAGAATTTAACGTTTTTGT
GCCAAATGTTCAAAAAGGTCTAGAAGTTGACTATCAAACAGGACAAATAACAGTCAGTCACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.136

82.23

0.519
  endA Streptococcus pneumoniae D39

63.136

82.23

0.519
  endA Streptococcus pneumoniae R6

63.136

82.23

0.519
  endA Streptococcus pneumoniae TIGR4

63.136

82.23

0.519