Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | Q9318_RS00930 | Genome accession | NZ_CP132229 |
| Coordinates | 148255..149211 (+) | Length | 318 a.a. |
| NCBI ID | WP_003098815.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain BH16-24 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 143255..154211
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9318_RS00890 (Q9318_00890) | - | 144127..144492 (+) | 366 | WP_003098799.1 | DUF1033 family protein | - |
| Q9318_RS00895 (Q9318_00895) | comYA | 144553..145494 (+) | 942 | WP_003098801.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| Q9318_RS00900 (Q9318_00900) | comYB | 145445..146461 (+) | 1017 | WP_003098804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| Q9318_RS00905 (Q9318_00905) | comGC/cglC | 146462..146788 (+) | 327 | WP_003098806.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| Q9318_RS00910 (Q9318_00910) | comGD | 146748..147176 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| Q9318_RS00915 (Q9318_00915) | comGE | 147148..147441 (+) | 294 | WP_031239176.1 | competence type IV pilus minor pilin ComGE | - |
| Q9318_RS00920 (Q9318_00920) | comYF | 147401..147850 (+) | 450 | WP_119773875.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| Q9318_RS00925 (Q9318_00925) | comGG | 147840..148193 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| Q9318_RS00930 (Q9318_00930) | comYH | 148255..149211 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| Q9318_RS00935 (Q9318_00935) | - | 149268..150464 (+) | 1197 | WP_003098816.1 | acetate kinase | - |
| Q9318_RS00940 (Q9318_00940) | - | 150587..150790 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| Q9318_RS00945 (Q9318_00945) | - | 150803..151255 (+) | 453 | WP_003098820.1 | hypothetical protein | - |
| Q9318_RS00950 (Q9318_00950) | - | 151265..151921 (+) | 657 | WP_003098822.1 | CPBP family intramembrane glutamic endopeptidase | - |
| Q9318_RS00955 (Q9318_00955) | proC | 151955..152725 (-) | 771 | WP_003098824.1 | pyrroline-5-carboxylate reductase | - |
| Q9318_RS00960 (Q9318_00960) | pepA | 152749..153816 (-) | 1068 | WP_003098826.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35968.86 Da Isoelectric Point: 4.5568
>NTDB_id=867821 Q9318_RS00930 WP_003098815.1 148255..149211(+) (comYH) [Streptococcus iniae strain BH16-24]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=867821 Q9318_RS00930 WP_003098815.1 148255..149211(+) (comYH) [Streptococcus iniae strain BH16-24]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |