Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q9G86_RS18975 Genome accession   NZ_CP132200
Coordinates   3803046..3803825 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain L1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3798046..3808825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS18950 (Q9G86_18950) uppS 3798794..3799570 (-) 777 WP_000971296.1 isoprenyl transferase -
  Q9G86_RS18955 (Q9G86_18955) frr 3799656..3800213 (-) 558 WP_000531505.1 ribosome recycling factor -
  Q9G86_RS18960 (Q9G86_18960) pyrH 3800216..3800938 (-) 723 WP_000042669.1 UMP kinase -
  Q9G86_RS18965 (Q9G86_18965) tsf 3801005..3801892 (-) 888 WP_001018577.1 translation elongation factor Ts -
  Q9G86_RS18970 (Q9G86_18970) rpsB 3801996..3802697 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  Q9G86_RS18975 (Q9G86_18975) codY 3803046..3803825 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q9G86_RS18980 (Q9G86_18980) hslU 3803903..3805294 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  Q9G86_RS18985 (Q9G86_18985) hslV 3805317..3805859 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  Q9G86_RS18990 (Q9G86_18990) xerC 3805902..3806801 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  Q9G86_RS18995 (Q9G86_18995) trmFO 3806867..3808171 (-) 1305 WP_305925831.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=867606 Q9G86_RS18975 WP_000421290.1 3803046..3803825(-) (codY) [Bacillus thuringiensis strain L1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=867606 Q9G86_RS18975 WP_000421290.1 3803046..3803825(-) (codY) [Bacillus thuringiensis strain L1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAATGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459