Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q9G86_RS18975 Genome accession   NZ_CP132200
Coordinates   3803046..3803825 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain L1     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3777748..3839509 3803046..3803825 within 0


Gene organization within MGE regions


Location: 3777748..3839509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS18865 (Q9G86_18865) - 3778319..3779218 (-) 900 WP_000868221.1 polysaccharide deacetylase family protein -
  Q9G86_RS18870 (Q9G86_18870) pnp 3779371..3781509 (-) 2139 WP_000076745.1 polyribonucleotide nucleotidyltransferase -
  Q9G86_RS18875 (Q9G86_18875) rpsO 3781670..3781939 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  Q9G86_RS18880 (Q9G86_18880) ribF 3782040..3783011 (-) 972 WP_000766703.1 bifunctional riboflavin kinase/FAD synthetase -
  Q9G86_RS18885 (Q9G86_18885) truB 3783055..3783978 (-) 924 WP_000399362.1 tRNA pseudouridine(55) synthase TruB -
  Q9G86_RS18890 (Q9G86_18890) rbfA 3784064..3784420 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  Q9G86_RS18895 (Q9G86_18895) - 3784436..3784717 (-) 282 WP_000634350.1 DUF503 domain-containing protein -
  Q9G86_RS18900 (Q9G86_18900) infB 3784714..3786780 (-) 2067 WP_000036347.1 translation initiation factor IF-2 -
  Q9G86_RS18905 (Q9G86_18905) - 3786785..3787096 (-) 312 WP_001286522.1 YlxQ family RNA-binding protein -
  Q9G86_RS18910 (Q9G86_18910) rnpM 3787097..3787369 (-) 273 WP_000071125.1 RNase P modulator RnpM -
  Q9G86_RS18915 (Q9G86_18915) nusA 3787381..3788487 (-) 1107 WP_000102598.1 transcription termination factor NusA -
  Q9G86_RS18920 (Q9G86_18920) rimP 3788505..3788975 (-) 471 WP_000359095.1 ribosome maturation factor RimP -
  Q9G86_RS18925 (Q9G86_18925) - 3789309..3793610 (-) 4302 WP_053563760.1 PolC-type DNA polymerase III -
  Q9G86_RS18930 (Q9G86_18930) - 3793735..3795435 (-) 1701 WP_090977191.1 proline--tRNA ligase -
  Q9G86_RS18935 (Q9G86_18935) rseP 3795545..3796801 (-) 1257 WP_001090233.1 RIP metalloprotease RseP -
  Q9G86_RS18940 (Q9G86_18940) dxr 3796819..3797961 (-) 1143 WP_098250909.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  Q9G86_RS18945 (Q9G86_18945) cdsA 3797985..3798776 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  Q9G86_RS18950 (Q9G86_18950) uppS 3798794..3799570 (-) 777 WP_000971296.1 isoprenyl transferase -
  Q9G86_RS18955 (Q9G86_18955) frr 3799656..3800213 (-) 558 WP_000531505.1 ribosome recycling factor -
  Q9G86_RS18960 (Q9G86_18960) pyrH 3800216..3800938 (-) 723 WP_000042669.1 UMP kinase -
  Q9G86_RS18965 (Q9G86_18965) tsf 3801005..3801892 (-) 888 WP_001018577.1 translation elongation factor Ts -
  Q9G86_RS18970 (Q9G86_18970) rpsB 3801996..3802697 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  Q9G86_RS18975 (Q9G86_18975) codY 3803046..3803825 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q9G86_RS18980 (Q9G86_18980) hslU 3803903..3805294 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  Q9G86_RS18985 (Q9G86_18985) hslV 3805317..3805859 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  Q9G86_RS18990 (Q9G86_18990) xerC 3805902..3806801 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  Q9G86_RS18995 (Q9G86_18995) trmFO 3806867..3808171 (-) 1305 WP_305925831.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q9G86_RS19000 (Q9G86_19000) topA 3808220..3810298 (-) 2079 WP_001286955.1 type I DNA topoisomerase -
  Q9G86_RS19005 (Q9G86_19005) dprA 3810443..3811312 (-) 870 WP_098250911.1 DNA-processing protein DprA -
  Q9G86_RS19010 (Q9G86_19010) sucD 3811400..3812302 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  Q9G86_RS19015 (Q9G86_19015) sucC 3812322..3813482 (-) 1161 WP_001020790.1 ADP-forming succinate--CoA ligase subunit beta -
  Q9G86_RS19020 (Q9G86_19020) - 3813676..3814449 (-) 774 WP_258131865.1 ribonuclease HII -
  Q9G86_RS19025 (Q9G86_19025) ylqF 3814506..3815396 (-) 891 WP_305925832.1 ribosome biogenesis GTPase YlqF -
  Q9G86_RS19030 (Q9G86_19030) lepB 3815417..3815968 (-) 552 WP_000711852.1 signal peptidase I -
  Q9G86_RS19035 (Q9G86_19035) rplS 3816070..3816414 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  Q9G86_RS19040 (Q9G86_19040) trmD 3816561..3817295 (-) 735 WP_000686899.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q9G86_RS19045 (Q9G86_19045) rimM 3817295..3817810 (-) 516 WP_000170272.1 ribosome maturation factor RimM -
  Q9G86_RS19050 (Q9G86_19050) - 3817931..3818158 (-) 228 WP_000737399.1 KH domain-containing protein -
  Q9G86_RS19055 (Q9G86_19055) rpsP 3818173..3818445 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  Q9G86_RS19060 (Q9G86_19060) ffh 3818547..3819896 (-) 1350 WP_000863460.1 signal recognition particle protein -
  Q9G86_RS19065 (Q9G86_19065) - 3819909..3820241 (-) 333 WP_000891062.1 putative DNA-binding protein -
  Q9G86_RS19070 (Q9G86_19070) ftsY 3820374..3821363 (-) 990 WP_000007642.1 signal recognition particle-docking protein FtsY -
  Q9G86_RS19075 (Q9G86_19075) smc 3821379..3824948 (-) 3570 WP_305925833.1 chromosome segregation protein SMC -
  Q9G86_RS19080 (Q9G86_19080) rncS 3825096..3825833 (-) 738 WP_001146875.1 ribonuclease III -
  Q9G86_RS19085 (Q9G86_19085) acpP 3825892..3826125 (-) 234 WP_000786062.1 acyl carrier protein -
  Q9G86_RS19090 (Q9G86_19090) fabG 3826195..3826935 (-) 741 WP_000911769.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  Q9G86_RS19095 (Q9G86_19095) fabD 3826935..3827879 (-) 945 WP_098235805.1 ACP S-malonyltransferase -
  Q9G86_RS19100 (Q9G86_19100) plsX 3827894..3828886 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  Q9G86_RS19105 (Q9G86_19105) fapR 3828883..3829476 (-) 594 WP_000747349.1 transcription factor FapR -
  Q9G86_RS19110 (Q9G86_19110) recG 3829565..3831613 (-) 2049 WP_305925834.1 ATP-dependent DNA helicase RecG -
  Q9G86_RS19115 (Q9G86_19115) - 3831904..3833580 (-) 1677 WP_000027131.1 DAK2 domain-containing protein -
  Q9G86_RS19120 (Q9G86_19120) - 3833603..3833965 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  Q9G86_RS19125 (Q9G86_19125) rpmB 3834342..3834530 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  Q9G86_RS19130 (Q9G86_19130) spoVM 3834604..3834684 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  Q9G86_RS19135 (Q9G86_19135) - 3834751..3835431 (-) 681 WP_000752665.1 thiamine diphosphokinase -
  Q9G86_RS19140 (Q9G86_19140) rpe 3835501..3836145 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  Q9G86_RS19145 (Q9G86_19145) rsgA 3836148..3837029 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  Q9G86_RS19150 (Q9G86_19150) pknB 3837280..3839250 (-) 1971 WP_305925835.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=867606 Q9G86_RS18975 WP_000421290.1 3803046..3803825(-) (codY) [Bacillus thuringiensis strain L1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=867606 Q9G86_RS18975 WP_000421290.1 3803046..3803825(-) (codY) [Bacillus thuringiensis strain L1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAATGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459