Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q9L40_RS18745 Genome accession   NZ_CP132190
Coordinates   1606575..1607435 (-) Length   286 a.a.
NCBI ID   WP_307732067.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601575..1612435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS12555 (Q9L40_12555) gspL 1601833..1603044 (+) 1212 WP_001288739.1 type II secretion system protein GspL -
  Q9L40_RS12560 (Q9L40_12560) - 1603054..1603551 (+) 498 WP_170921598.1 type II secretion system protein M -
  Q9L40_RS12565 (Q9L40_12565) - 1603553..1604311 (+) 759 WP_305798981.1 type II secretion system protein N -
  Q9L40_RS12570 (Q9L40_12570) cysQ 1604363..1605190 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Q9L40_RS12575 (Q9L40_12575) nudE 1605213..1605761 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  Q9L40_RS12580 (Q9L40_12580) nfuA 1605900..1606487 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  Q9L40_RS18745 comF 1606575..1607435 (-) 861 WP_307732067.1 ComF family protein Machinery gene
  Q9L40_RS12595 (Q9L40_12595) bioH 1607371..1608132 (+) 762 WP_305799452.1 pimeloyl-ACP methyl ester esterase BioH -
  Q9L40_RS12600 (Q9L40_12600) - 1608294..1608764 (+) 471 WP_305798979.1 ATP-dependent Lon protease -
  Q9L40_RS12605 (Q9L40_12605) - 1608859..1611180 (-) 2322 WP_305798978.1 Tex family protein -
  Q9L40_RS12610 (Q9L40_12610) greB 1611423..1611908 (+) 486 WP_113592693.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32671.74 Da        Isoelectric Point: 8.3592

>NTDB_id=867529 Q9L40_RS18745 WP_307732067.1 1606575..1607435(-) (comF) [Vibrio cholerae strain DRC187]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIRSANWQDEAHYPDSWLAMLTNWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQSWLEHGYRCARCGLPTLTPVEQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLTTQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHLPKHQ
RIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=867529 Q9L40_RS18745 WP_307732067.1 1606575..1607435(-) (comF) [Vibrio cholerae strain DRC187]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCGCTCAGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCGCTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAATCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACCCTCACCCC
AGTTGAACAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCACCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATACACAACCTACGCGATGCGTTTGTGCTCAATCATTTACCGAAACATCAA
CGCATTGCGATTGTGGACGATGTGGTGACCACAGGCAGCACGATCCGACATTTATGTGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGTCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

95.105

100

0.951
  comF Vibrio campbellii strain DS40M4

44.958

83.217

0.374