Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   Q8W18_RS12500 Genome accession   NZ_CP132058
Coordinates   2435077..2437401 (-) Length   774 a.a.
NCBI ID   WP_306010955.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2430077..2442401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS12485 (Q8W18_12485) dtd 2431726..2432169 (-) 444 WP_003216527.1 D-aminoacyl-tRNA deacylase -
  Q8W18_RS12490 (Q8W18_12490) - 2432188..2434398 (-) 2211 WP_012010732.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  Q8W18_RS12495 (Q8W18_12495) - 2434541..2435053 (-) 513 WP_003216770.1 adenine phosphoribosyltransferase -
  Q8W18_RS12500 (Q8W18_12500) recJ 2435077..2437401 (-) 2325 WP_306010955.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  Q8W18_RS12505 (Q8W18_12505) - 2437483..2437836 (-) 354 WP_012010734.1 lipopolysaccharide assembly LapA domain-containing protein -
  Q8W18_RS12510 (Q8W18_12510) - 2437938..2438426 (-) 489 WP_306010956.1 cation:proton antiporter regulatory subunit -
  Q8W18_RS12515 (Q8W18_12515) secDF 2438614..2440842 (-) 2229 WP_169056886.1 protein translocase subunit SecDF -
  Q8W18_RS12520 (Q8W18_12520) - 2440884..2441180 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87332.00 Da        Isoelectric Point: 4.8957

>NTDB_id=867058 Q8W18_RS12500 WP_306010955.1 2435077..2437401(-) (recJ) [Bacillus pumilus strain F12-21]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAVEQQ
ESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPAQLLDLVAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEEKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEVGMLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEDKLLDCVGFHQGQLKEEIVTGSRISVIGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTISTLDQEKYVVVCFDEETKEEVSIPIHHVHAENVSTLDVEGKYVVFADVPADEHLLRQLLE
NQKPARVYTVFQRKEDHFMSSFPSRDQFKWFYGFLLKRGSFPLKEQGMELAKHRGWTKDTMIFMTKVFFELGFVKIENGV
LSIVRDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=867058 Q8W18_RS12500 WP_306010955.1 2435077..2437401(-) (recJ) [Bacillus pumilus strain F12-21]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTCATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGGTCGAACAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACAAGTACGTCTGTGCTTTTACATACATTAAAAGAGTT
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGTCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGCGCATCGCTTGTCATCACCGTCGATACAGGCATTGCAGCTGTAAATGAAGCACGTATTGCAAAAGAAATA
GGGTTAGACTTGATCATTACAGATCACCATGAACCAAGCGAAGAGCTGCCTGAAGCACTTGCGATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTACCCCTTTAAAGAACTTGCCGGTGTAGGCGTAGCATTTAAAGTGGCTCATGCTCTTCTTGGTAAGC
TGCCAGCTCAGCTGTTAGATCTTGTGGCAATTGGGACAATAGCGGACCTTGTGCCGCTTCATGATGAGAATAGATGGCTC
GCTAAAAAAGGGCTTATGCAGCTTCGGCAGTCGAATAGACCGGGACTGAAGGCGTTATTGAAAGAAGCGGGTGCTACTCT
TGAAGAAGCAAATGAAGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTCATGACAGAGGAAAAGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATTGTGAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGACAGGTGATGACCAGTCTGCCATTGT
TGTAGCGAAAGCTGGCTGGAATCCGGGTGTTGTTGGAATTGTTGCCTCTAAATTGACAGATACATTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGATGAAGAGACGCAAATGGCAAAAGGTTCAGCACGGAGTATTCCCGGCTTCGATCTATTTTTCCAT
TTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGCGGGCACCCGATGGCTGCGGGCATGACACTTCGAGCGGATGATGT
CCCTTTACTAAGGGAAAGATTAAATCAATATGCGAATGAAACGTTGACAGAGGAAGACTTTATTCCGATTCAGCGTGTCG
ATGCTGTATGCAAGGTAGACGAGTTGACGGTTGAAGCGATTGAAGAAGTGGGGATGCTGTCACCATTTGGCATGCAGAAT
CCAAAGCCGTTCATCATGATTGAAGATGCGAGACTTGAAGAAATCCGAACCATTGGAGCAAATCAAAATCATATCAAAAT
GTCTCTGAAAGATGAAGACAAACTGCTTGACTGTGTCGGTTTTCATCAAGGTCAATTGAAAGAAGAAATTGTCACAGGTA
GCCGCATTTCCGTCATTGGTGAAATGTCCATCAATGAATGGAATAACCGGAAGAAACCACAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGCTGTTTGATTTGCGCGGCAAAAAGGATTGGGAAAAGACAATCTCCACGCTTGACCAAGAAAA
ATATGTGGTGGTCTGTTTTGACGAAGAAACAAAAGAGGAAGTCAGCATCCCGATTCATCATGTCCATGCAGAAAATGTTT
CAACACTCGATGTTGAAGGCAAGTATGTCGTCTTTGCAGATGTTCCTGCAGATGAACACTTGCTAAGGCAGCTGTTAGAA
AATCAAAAGCCAGCTAGAGTGTATACGGTTTTCCAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAGCCGTGATCA
ATTCAAATGGTTTTATGGATTCTTGTTAAAACGAGGAAGTTTCCCTCTCAAGGAACAAGGAATGGAGCTAGCAAAACATA
GAGGCTGGACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACGTGATGCCCCTAAAAAAGATTTAACGGCATCAGCATCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(309-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.053

100

0.673