Detailed information NTG0867057

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: Q8W18_RS12425
• Genome accession: NZ_CP132058
• Coordinates: 2417561..2419945 (-)
• Length: 794 a.a.
• NCBI ID: WP_169056898.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain F12-21
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2412561..2424945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q8W18_RS12390 (Q8W18_12390)	-	2413613..2414341 (+)	729	WP_050943677.1	amino acid ABC transporter ATP-binding protein	-
Q8W18_RS12395 (Q8W18_12395)	-	2414357..2415166 (+)	810	WP_306010949.1	transporter substrate-binding domain-containing protein	-
Q8W18_RS12400 (Q8W18_12400)	-	2415247..2415900 (+)	654	WP_058014572.1	amino acid ABC transporter permease	-
Q8W18_RS12405 (Q8W18_12405)	-	2415916..2416566 (+)	651	WP_306010950.1	amino acid ABC transporter permease	-
Q8W18_RS12410 (Q8W18_12410)	-	2416610..2416741 (-)	132	WP_003216198.1	YrzQ family protein	-
Q8W18_RS12415 (Q8W18_12415)	-	2416762..2416953 (-)	192	WP_003216308.1	hypothetical protein	-
Q8W18_RS12420 (Q8W18_12420)	-	2416967..2417425 (-)	459	WP_224925462.1	prc-barrel domain-containing protein	-
Q8W18_RS12425 (Q8W18_12425)	recD2	2417561..2419945 (-)	2385	WP_169056898.1	ATP-dependent RecD-like DNA helicase	Machinery gene
Q8W18_RS12430 (Q8W18_12430)	-	2419967..2420620 (-)	654	WP_306010951.1	lipopolysaccharide assembly protein LapB	-
Q8W18_RS12435 (Q8W18_12435)	mnmA	2420681..2421799 (-)	1119	WP_003216305.1	tRNA 2-thiouridine(34) synthase MnmA	-
Q8W18_RS12440 (Q8W18_12440)	-	2421895..2423037 (-)	1143	WP_306010952.1	cysteine desulfurase family protein	-
Q8W18_RS12445 (Q8W18_12445)	cymR	2423056..2423475 (-)	420	WP_117731127.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88919.42 Da
• Isoelectric Point: 5.2642

>NTDB_id=867057 Q8W18_RS12425 WP_169056898.1 2417561..2419945(-) (recD2) [Bacillus pumilus strain F12-21]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGSQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTGEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=867057 Q8W18_RS12425 WP_169056898.1 2417561..2419945(-) (recD2) [Bacillus pumilus strain F12-21]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCACCCGAAGTTTGGAGAA
CAGTTTCAGGCAACTCATTTTCAAAAAGAAGTACCTACAACAAAGCAAGGAATTATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGCAAAAAGACGGCGGAAGAAATTGTAGGACAGCTTGGCAGTCAGACGCTTCATAAAATTATGCGTGACC
CAGCGGTTTTATATGACGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTTCAGGAGCATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATACGGCTTTGGCCCGCAGCTCAGCATGAAAATTTATCAAGTGTACGAGAG
TGAGACGCTGCAAAAGATTGAAGAAAACCCGTACCAGCTTGTCAAGGATGTCGAAGGGATCGGATTTATTAAGGCGGATG
AACTTGGTGCTAGAACCGGCATCTCAGGAAATGACCCAGAGCGGATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGTCTTCAGGACGGTCACACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGAAAACTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCCAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAAACAA
CAGTCATTAAAGGAATTGTTGAGCTTTACAGCGACCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGAATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGTCTGCTTGGATGGAACGGATCTGAGGGCTTCTCGCATGATGAAGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCACTTGTTTAAAGCCATTCCTGACCATATCCAAGTGATC
ATGGTGGGAGATGAACATCAGCTTCCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGCCGTACC
AGCTGTTACCCTCACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAAGATATTACCGCACGTTCAAAAGACCGATCCTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTCGTTAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGACATTCAGGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGAGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAGAACAATATTTTTAACGGTGATATT
GGAGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACTTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGTTCCATCCATAAATCACAAGGTAGTGAAT
TTCCCATTGTTGTACTGCCAGTCGTGAGAAGCTACTACAGAATGCTTCGGCGAAATCTGCTTTATACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACAGGAGAGGTCATGGATGCGGAGCTTGCAGCTCTTCAAAAAGAACTGCCAT
TTAGCGTACATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80	100	0.801