Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q8W18_RS08135 Genome accession   NZ_CP132058
Coordinates   1614313..1615092 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609313..1620092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS08115 (Q8W18_08115) trmFO 1610017..1611321 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q8W18_RS08120 (Q8W18_08120) xerC 1611384..1612301 (+) 918 WP_169056510.1 tyrosine recombinase XerC -
  Q8W18_RS08125 (Q8W18_08125) hslV 1612316..1612861 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  Q8W18_RS08130 (Q8W18_08130) hslU 1612878..1614278 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  Q8W18_RS08135 (Q8W18_08135) codY 1614313..1615092 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q8W18_RS08140 (Q8W18_08140) flgB 1615380..1615769 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  Q8W18_RS08145 (Q8W18_08145) flgC 1615769..1616221 (+) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  Q8W18_RS08150 (Q8W18_08150) fliE 1616233..1616550 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  Q8W18_RS08155 (Q8W18_08155) fliF 1616600..1618192 (+) 1593 WP_306012133.1 flagellar basal-body MS-ring/collar protein FliF -
  Q8W18_RS08160 (Q8W18_08160) fliG 1618204..1619220 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  Q8W18_RS08165 (Q8W18_08165) fliH 1619213..1619977 (+) 765 WP_169056511.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=867045 Q8W18_RS08135 WP_003210838.1 1614313..1615092(+) (codY) [Bacillus pumilus strain F12-21]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=867045 Q8W18_RS08135 WP_003210838.1 1614313..1615092(+) (codY) [Bacillus pumilus strain F12-21]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAATTCCCTGAGGAATATACAAAGAGTCTATTC
AATATCCCTGAAACATCTTCAAATCTTGATATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471