Detailed information NTG0866965

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q7A27_RS23735
• Genome accession: NZ_CP132041
• Coordinates: 4944366..4945163 (+)
• Length: 265 a.a.
• NCBI ID: WP_306124593.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain B1645-1B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4939366..4950163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7A27_RS23700 (Q7A27_23700)	gspH	4939519..4940004 (+)	486	WP_233470822.1	type II secretion system minor pseudopilin GspH	-
Q7A27_RS23705 (Q7A27_23705)	gspI	4940001..4940366 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
Q7A27_RS23710 (Q7A27_23710)	gspJ	4940378..4940962 (+)	585	WP_015585121.1	type II secretion system minor pseudopilin GspJ	-
Q7A27_RS23715 (Q7A27_23715)	gspK	4940959..4941945 (+)	987	WP_048024055.1	type II secretion system minor pseudopilin GspK	-
Q7A27_RS23720 (Q7A27_23720)	gspL	4941932..4943134 (+)	1203	WP_015585123.1	type II secretion system protein GspL	-
Q7A27_RS23725 (Q7A27_23725)	gspM	4943127..4943621 (+)	495	WP_044348321.1	type II secretion system protein GspM	-
Q7A27_RS23730 (Q7A27_23730)	-	4943611..4944351 (+)	741	WP_103073373.1	type II secretion system protein N	-
Q7A27_RS23735 (Q7A27_23735)	pilD	4944366..4945163 (+)	798	WP_306124593.1	A24 family peptidase	Machinery gene
Q7A27_RS23740 (Q7A27_23740)	hrpB	4945184..4947613 (-)	2430	WP_306124594.1	ATP-dependent helicase HrpB	-
Q7A27_RS23745 (Q7A27_23745)	thpR	4947686..4948222 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
Q7A27_RS23750 (Q7A27_23750)	sfsA	4948222..4948938 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
Q7A27_RS23755 (Q7A27_23755)	dksA	4949103..4949558 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29315.95 Da
• Isoelectric Point: 8.4762

>NTDB_id=866965 Q7A27_RS23735 WP_306124593.1 4944366..4945163(+) (pilD) [Raoultella ornithinolytica strain B1645-1B]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRTRCCQAPISQRYPLTELASGLLFVLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=866965 Q7A27_RS23735 WP_306124593.1 4944366..4945163(+) (pilD) [Raoultella ornithinolytica strain B1645-1B]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCACCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGTGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	45.221	100	0.464
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	44.574	97.358	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43