Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7W79_RS21730 Genome accession   NZ_CP131931
Coordinates   3001691..3002416 (+) Length   241 a.a.
NCBI ID   WP_273979164.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2996691..3007416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS21715 (Q7W79_22160) - 2997794..3000115 (+) 2322 WP_273979165.1 Tex family protein -
  Q7W79_RS21720 (Q7W79_22165) - 3000251..3000715 (-) 465 WP_005459035.1 hypothetical protein -
  Q7W79_RS21725 (Q7W79_22170) bioH 3000839..3001606 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  Q7W79_RS21730 (Q7W79_22175) comF 3001691..3002416 (+) 726 WP_273979164.1 ComF family protein Machinery gene
  Q7W79_RS21735 (Q7W79_22180) nfuA 3002514..3003098 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  Q7W79_RS21740 (Q7W79_22185) nudE 3003319..3003888 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  Q7W79_RS21745 (Q7W79_22190) cysQ 3003929..3004756 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Q7W79_RS21750 (Q7W79_22195) - 3005043..3005804 (-) 762 WP_021822200.1 type II secretion system protein N -
  Q7W79_RS21755 (Q7W79_22200) - 3005806..3006297 (-) 492 WP_273979184.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27690.86 Da        Isoelectric Point: 8.9991

>NTDB_id=866361 Q7W79_RS21730 WP_273979164.1 3001691..3002416(+) (comF) [Vibrio parahaemolyticus strain RP0132]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=866361 Q7W79_RS21730 WP_273979164.1 3001691..3002416(+) (comF) [Vibrio parahaemolyticus strain RP0132]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGCTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTAAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477