Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP54_RS06670 Genome accession   NZ_CP148149
Coordinates   1288700..1289215 (-) Length   171 a.a.
NCBI ID   WP_002875972.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283700..1294215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP54_RS06655 (WHP54_06655) - 1283803..1285620 (-) 1818 WP_004297673.1 motility associated factor glycosyltransferase family protein -
  WHP54_RS06660 (WHP54_06660) - 1285617..1287449 (-) 1833 WP_052815648.1 motility associated factor glycosyltransferase family protein -
  WHP54_RS06665 (WHP54_06665) - 1287459..1288700 (-) 1242 WP_002864247.1 DUF2920 family protein -
  WHP54_RS06670 (WHP54_06670) ctsG 1288700..1289215 (-) 516 WP_002875972.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP54_RS06675 (WHP54_06675) tsaD 1289216..1290223 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP54_RS06680 (WHP54_06680) - 1290220..1291614 (-) 1395 WP_002868458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP54_RS06685 (WHP54_06685) dxr 1291616..1292686 (-) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP54_RS06690 (WHP54_06690) cdsA 1292683..1293408 (-) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  WHP54_RS06695 (WHP54_06695) - 1293417..1293755 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=866178 WHP54_RS06670 WP_002875972.1 1288700..1289215(-) (ctsG) [Campylobacter jejuni strain Z1323PCJ0006]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=866178 WHP54_RS06670 WP_002875972.1 1288700..1289215(-) (ctsG) [Campylobacter jejuni strain Z1323PCJ0006]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936