Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7568_RS01610 Genome accession   NZ_CP131896
Coordinates   346471..346896 (+) Length   141 a.a.
NCBI ID   WP_342252758.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2010N16-194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341471..351896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7568_RS01600 (Q7568_01605) pilY1 342125..345979 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  Q7568_RS01605 (Q7568_01610) pilY2 345992..346474 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  Q7568_RS01610 (Q7568_01615) pilE 346471..346896 (+) 426 WP_342252758.1 type IV pilin protein Machinery gene
  Q7568_RS01615 (Q7568_01620) rpsP 347043..347294 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7568_RS01620 (Q7568_01625) rimM 347314..347862 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  Q7568_RS01625 (Q7568_01630) trmD 347908..348648 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7568_RS01630 (Q7568_01635) rplS 348857..349225 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  Q7568_RS01635 (Q7568_01640) - 349278..350219 (-) 942 WP_085916958.1 triacylglycerol lipase -
  Q7568_RS01640 (Q7568_01645) - 350334..351368 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15230.49 Da        Isoelectric Point: 7.8464

>NTDB_id=865892 Q7568_RS01610 WP_342252758.1 346471..346896(+) (pilE) [Acinetobacter baumannii strain 2010N16-194]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATLISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=865892 Q7568_RS01610 WP_342252758.1 346471..346896(+) (pilE) [Acinetobacter baumannii strain 2010N16-194]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACTTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

91.489

100

0.915
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511