Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHO38_RS08235 Genome accession   NZ_CP148124
Coordinates   1567157..1567606 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562157..1572606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS08195 ctaE 1562174..1562797 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHO38_RS08200 ctaF 1562800..1563132 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHO38_RS08205 ctaG 1563159..1564052 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHO38_RS08210 ylbA 1564084..1564446 (-) 363 WP_003232238.1 YugN family protein -
  WHO38_RS08215 ylbB 1564586..1565032 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHO38_RS08220 ylbC 1565116..1566156 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHO38_RS08225 ylbD 1566388..1566786 (+) 399 WP_003232233.1 YlbD family protein -
  WHO38_RS08230 ylbE 1566802..1567041 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHO38_RS08235 ylbF 1567157..1567606 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHO38_RS08240 ylbG 1567661..1567933 (+) 273 WP_009967171.1 YlbG family protein -
  WHO38_RS08245 rsmD 1568256..1568810 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHO38_RS08250 coaD 1568815..1569300 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHO38_RS08255 spoVV 1569311..1570537 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHO38_RS08260 ylbK 1570718..1571500 (+) 783 WP_003232221.1 patatin family protein -
  WHO38_RS08265 sepM 1571502..1572527 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=865561 WHO38_RS08235 WP_003221370.1 1567157..1567606(+) (ylbF) [Bacillus subtilis isolate FELIX_MS521]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=865561 WHO38_RS08235 WP_003221370.1 1567157..1567606(+) (ylbF) [Bacillus subtilis isolate FELIX_MS521]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1