Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   Q7611_RS10005 Genome accession   NZ_CP131723
Coordinates   1991565..1991912 (-) Length   115 a.a.
NCBI ID   WP_342121743.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C08-260     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1986565..1996912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7611_RS09980 (Q7611_09970) otnI 1987032..1987808 (-) 777 WP_342121741.1 2-oxo-tetronate isomerase -
  Q7611_RS09985 (Q7611_09975) otnC 1987811..1988443 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  Q7611_RS09990 (Q7611_09980) otnK 1988440..1989681 (-) 1242 WP_116945057.1 3-oxo-tetronate kinase -
  Q7611_RS09995 (Q7611_09985) ltnD 1989684..1990589 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  Q7611_RS10000 (Q7611_09990) - 1990760..1991518 (+) 759 WP_342121742.1 DeoR/GlpR family DNA-binding transcription regulator -
  Q7611_RS10005 (Q7611_09995) comE1/comEA 1991565..1991912 (-) 348 WP_342121743.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7611_RS10010 (Q7611_10000) ispH 1992081..1993025 (-) 945 WP_105899273.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7611_RS10015 (Q7611_10005) lspA 1993022..1993537 (-) 516 WP_005651632.1 signal peptidase II -
  Q7611_RS10020 (Q7611_10010) - 1993607..1995166 (-) 1560 WP_342121744.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12393.26 Da        Isoelectric Point: 8.0085

>NTDB_id=864809 Q7611_RS10005 WP_342121743.1 1991565..1991912(-) (comE1/comEA) [Haemophilus influenzae strain 2018C08-260]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQPVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=864809 Q7611_RS10005 WP_342121743.1 1991565..1991912(-) (comE1/comEA) [Haemophilus influenzae strain 2018C08-260]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

59.649

99.13

0.591
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374