Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHO62_RS08235 Genome accession   NZ_CP148114
Coordinates   1567430..1567879 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562430..1572879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS08195 ctaE 1562447..1563070 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHO62_RS08200 ctaF 1563073..1563405 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHO62_RS08205 ctaG 1563432..1564325 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHO62_RS08210 ylbA 1564357..1564719 (-) 363 WP_003232238.1 YugN family protein -
  WHO62_RS08215 ylbB 1564859..1565305 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHO62_RS08220 ylbC 1565389..1566429 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHO62_RS08225 ylbD 1566661..1567059 (+) 399 WP_003232233.1 YlbD family protein -
  WHO62_RS08230 ylbE 1567075..1567314 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHO62_RS08235 ylbF 1567430..1567879 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHO62_RS08240 ylbG 1567934..1568206 (+) 273 WP_009967171.1 YlbG family protein -
  WHO62_RS08245 rsmD 1568529..1569083 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHO62_RS08250 coaD 1569088..1569573 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHO62_RS08255 spoVV 1569584..1570810 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHO62_RS08260 ylbK 1570991..1571773 (+) 783 WP_003232221.1 patatin family protein -
  WHO62_RS08265 sepM 1571775..1572800 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=864765 WHO62_RS08235 WP_003221370.1 1567430..1567879(+) (ylbF) [Bacillus subtilis isolate FELIX_MS506]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=864765 WHO62_RS08235 WP_003221370.1 1567430..1567879(+) (ylbF) [Bacillus subtilis isolate FELIX_MS506]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1