Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q7622_RS08830 Genome accession   NZ_CP131711
Coordinates   1732015..1733046 (-) Length   343 a.a.
NCBI ID   WP_341989082.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2014C08-275     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727015..1738046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7622_RS08780 (Q7622_08750) - 1727109..1727870 (-) 762 WP_001107762.1 SDR family NAD(P)-dependent oxidoreductase -
  Q7622_RS08785 (Q7622_08755) ytpR 1727903..1728529 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  Q7622_RS08790 (Q7622_08760) - 1728545..1728862 (-) 318 WP_000615767.1 thioredoxin family protein -
  Q7622_RS08795 (Q7622_08765) - 1728859..1729158 (-) 300 WP_001815024.1 DUF4651 domain-containing protein -
  Q7622_RS08800 (Q7622_08770) - 1729252..1729383 (+) 132 WP_001811306.1 hypothetical protein -
  Q7622_RS08805 (Q7622_08775) - 1729408..1729605 (-) 198 Protein_1721 N-acetylmuramoyl-L-alanine amidase family protein -
  Q7622_RS08810 (Q7622_08780) - 1729848..1730522 (-) 675 WP_000725707.1 hypothetical protein -
  Q7622_RS08815 (Q7622_08785) - 1730527..1730973 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  Q7622_RS08820 (Q7622_08790) - 1731087..1731590 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  Q7622_RS08825 (Q7622_08795) - 1731587..1731949 (-) 363 WP_000078804.1 DUF2200 family protein -
  Q7622_RS08830 (Q7622_08800) rcrQ 1732015..1733046 (-) 1032 WP_341989082.1 ATP-binding cassette domain-containing protein Regulator
  Q7622_RS08835 (Q7622_08805) rcrP 1733053..1733874 (-) 822 WP_000601671.1 ABC transporter permease Regulator
  Q7622_RS08840 (Q7622_08810) - 1733891..1734362 (-) 472 Protein_1728 MarR family winged helix-turn-helix transcriptional regulator -
  Q7622_RS08845 (Q7622_08815) - 1734486..1735202 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7622_RS08850 (Q7622_08820) ply 1736083..1737498 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  Q7622_RS08855 (Q7622_08825) - 1737509..1737919 (-) 411 WP_000595763.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37997.28 Da        Isoelectric Point: 4.4769

>NTDB_id=864209 Q7622_RS08830 WP_341989082.1 1732015..1733046(-) (rcrQ) [Streptococcus pneumoniae strain 2014C08-275]
MGFLLMGALFIVFPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSVTAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKRSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSIIRNADLILVMKDGNIIEQGNYEE
LMAQGGVYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=864209 Q7622_RS08830 WP_341989082.1 1732015..1733046(-) (rcrQ) [Streptococcus pneumoniae strain 2014C08-275]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTTTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGTGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGAGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAATCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCGTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-117)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

78.125

65.306

0.51
  rcrP Streptococcus mutans UA159

36.994

100

0.373