Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q7624_RS08925 Genome accession   NZ_CP131709
Coordinates   1730100..1731131 (-) Length   343 a.a.
NCBI ID   WP_000506409.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2016S11-245     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725100..1736131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7624_RS08875 (Q7624_08850) - 1725194..1725955 (-) 762 WP_001107762.1 SDR family NAD(P)-dependent oxidoreductase -
  Q7624_RS08880 (Q7624_08855) ytpR 1725988..1726614 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  Q7624_RS08885 (Q7624_08860) - 1726630..1726947 (-) 318 WP_000615767.1 thioredoxin family protein -
  Q7624_RS08890 (Q7624_08865) - 1726944..1727243 (-) 300 WP_001815024.1 DUF4651 domain-containing protein -
  Q7624_RS08895 (Q7624_08870) - 1727337..1727468 (+) 132 WP_001811306.1 hypothetical protein -
  Q7624_RS08900 (Q7624_08875) - 1727493..1727690 (-) 198 Protein_1740 N-acetylmuramoyl-L-alanine amidase family protein -
  Q7624_RS08905 (Q7624_08880) - 1727933..1728607 (-) 675 WP_000725707.1 hypothetical protein -
  Q7624_RS08910 (Q7624_08885) - 1728612..1729058 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  Q7624_RS08915 (Q7624_08890) - 1729172..1729675 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  Q7624_RS08920 (Q7624_08895) - 1729672..1730034 (-) 363 WP_000078804.1 DUF2200 family protein -
  Q7624_RS08925 (Q7624_08900) rcrQ 1730100..1731131 (-) 1032 WP_000506409.1 ATP-binding cassette domain-containing protein Regulator
  Q7624_RS08930 (Q7624_08905) rcrP 1731138..1731959 (-) 822 WP_000601671.1 ABC transporter permease Regulator
  Q7624_RS08935 (Q7624_08910) - 1731976..1732447 (-) 472 Protein_1747 MarR family winged helix-turn-helix transcriptional regulator -
  Q7624_RS08940 (Q7624_08915) - 1732571..1733287 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q7624_RS08945 (Q7624_08920) ply 1734168..1735583 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  Q7624_RS08950 (Q7624_08925) - 1735594..1736004 (-) 411 WP_000595763.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38045.32 Da        Isoelectric Point: 4.4769

>NTDB_id=864055 Q7624_RS08925 WP_000506409.1 1730100..1731131(-) (rcrQ) [Streptococcus pneumoniae strain 2016S11-245]
MGFLLMGALFIVFPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSVTAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKRSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSIIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=864055 Q7624_RS08925 WP_000506409.1 1730100..1731131(-) (rcrQ) [Streptococcus pneumoniae strain 2016S11-245]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTTTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGTGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGAGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAATCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-117)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

78.571

65.306

0.513
  rcrP Streptococcus mutans UA159

36.994

100

0.373