Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WDR08_RS18095 Genome accession   NZ_CP148035
Coordinates   3802954..3803379 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3797954..3808379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS18075 (WDR08_18075) ileS 3798111..3800942 (+) 2832 WP_023103515.1 isoleucine--tRNA ligase -
  WDR08_RS18080 (WDR08_18080) lspA 3800935..3801444 (+) 510 WP_003110420.1 signal peptidase II -
  WDR08_RS18085 (WDR08_18085) fkpB 3801437..3801877 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  WDR08_RS18090 (WDR08_18090) ispH 3801963..3802907 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WDR08_RS18095 (WDR08_18095) comF 3802954..3803379 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  WDR08_RS18100 (WDR08_18100) pilY2 3803376..3803723 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  WDR08_RS18105 (WDR08_18105) pilY1 3803725..3807216 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  WDR08_RS18110 (WDR08_18110) pilX 3807228..3807815 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=863763 WDR08_RS18095 WP_003094721.1 3802954..3803379(-) (comF) [Pseudomonas aeruginosa strain S1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=863763 WDR08_RS18095 WP_003094721.1 3802954..3803379(-) (comF) [Pseudomonas aeruginosa strain S1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383