Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   WDR08_RS09525 Genome accession   NZ_CP148035
Coordinates   1937613..1938338 (+) Length   241 a.a.
NCBI ID   WP_031756987.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain S1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932613..1943338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS09495 (WDR08_09495) - 1932733..1933611 (-) 879 WP_003103323.1 allophanate hydrolase subunit 1 -
  WDR08_RS09500 (WDR08_09500) - 1933613..1934989 (-) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  WDR08_RS09505 (WDR08_09505) - 1935000..1935248 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  WDR08_RS09510 (WDR08_09510) - 1935325..1936083 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  WDR08_RS09515 (WDR08_09515) - 1936201..1937127 (+) 927 WP_074231244.1 LysR family transcriptional regulator -
  WDR08_RS09520 (WDR08_09520) - 1937181..1937474 (+) 294 WP_003113255.1 hypothetical protein -
  WDR08_RS09525 (WDR08_09525) comF 1937613..1938338 (+) 726 WP_031756987.1 ComF family protein Machinery gene
  WDR08_RS09530 (WDR08_09530) - 1938380..1938700 (+) 321 WP_003117926.1 YfiM family lipoprotein -
  WDR08_RS09535 (WDR08_09535) - 1938768..1939526 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  WDR08_RS09540 (WDR08_09540) - 1939588..1940562 (+) 975 WP_031756990.1 serine/threonine protein kinase -
  WDR08_RS09545 (WDR08_09545) rarD 1940765..1941661 (+) 897 WP_003103301.1 EamA family transporter RarD -
  WDR08_RS09550 (WDR08_09550) - 1942351..1942866 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27104.64 Da        Isoelectric Point: 11.2212

>NTDB_id=863725 WDR08_RS09525 WP_031756987.1 1937613..1938338(+) (comF) [Pseudomonas aeruginosa strain S1]
MSFLLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=863725 WDR08_RS09525 WP_031756987.1 1937613..1938338(+) (comF) [Pseudomonas aeruginosa strain S1]
ATGTCGTTCCTGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382