Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK26_RS05245 Genome accession   NZ_AP027487
Coordinates   1083264..1083803 (+) Length   179 a.a.
NCBI ID   WP_338390123.1    Uniprot ID   -
Organism   Escherichia coli strain LR-21-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078264..1088803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK26_RS05200 (VEE05_10080) csrA 1078851..1079036 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK26_RS05230 (VEE05_10090) yqaB 1080494..1081060 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK26_RS05235 (VEE05_10100) yqaA 1081057..1081485 (+) 429 WP_001287454.1 YqaA family protein -
  AABK26_RS05240 (VEE05_10110) gshA 1081558..1083114 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK26_RS05245 (VEE05_10120) luxS 1083264..1083803 (+) 540 WP_338390123.1 S-ribosylhomocysteine lyase Regulator
  AABK26_RS05250 (VEE05_10130) emrB 1083843..1085381 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK26_RS05255 (VEE05_10140) emrA 1085398..1086570 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK26_RS05260 (VEE05_10150) emrR 1086697..1087227 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK26_RS05265 (VEE05_10160) ygaH 1087318..1087653 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK26_RS05270 (VEE05_10170) ygaZ 1087643..1088380 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20372.26 Da        Isoelectric Point: 5.5230

>NTDB_id=86370 AABK26_RS05245 WP_338390123.1 1083264..1083803(+) (luxS) [Escherichia coli strain LR-21-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHIKSVNYLHN

Nucleotide


Download         Length: 540 bp        

>NTDB_id=86370 AABK26_RS05245 WP_338390123.1 1083264..1083803(+) (luxS) [Escherichia coli strain LR-21-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCAAGTCAGTAAACTATCTTCACAATTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

95.531

0.698

Multiple sequence alignment