Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KI215_RS11310 Genome accession   NZ_AP024601
Coordinates   2244473..2246734 (-) Length   753 a.a.
NCBI ID   WP_212772830.1    Uniprot ID   A0A8D5ZPK9
Organism   Polycladomyces abyssicola strain JIR-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239473..2251734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI215_RS11290 (JIR001_22800) - 2242230..2243294 (-) 1065 WP_246512099.1 AI-2E family transporter -
  KI215_RS11295 (JIR001_22810) - 2243482..2243697 (-) 216 WP_212772828.1 hypothetical protein -
  KI215_RS11300 (JIR001_22820) - 2243717..2243911 (-) 195 WP_212775174.1 hypothetical protein -
  KI215_RS11305 (JIR001_22830) - 2243926..2244423 (-) 498 WP_212772829.1 PRC-barrel domain-containing protein -
  KI215_RS11310 (JIR001_22840) recD2 2244473..2246734 (-) 2262 WP_212772830.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KI215_RS11315 (JIR001_22850) - 2246847..2247374 (-) 528 WP_212772831.1 hypothetical protein -
  KI215_RS11320 (JIR001_22860) - 2247528..2248670 (-) 1143 WP_212772832.1 cysteine desulfurase family protein -
  KI215_RS11325 (JIR001_22870) cymR 2248688..2249107 (-) 420 WP_212772833.1 cysteine metabolism transcriptional regulator CymR -
  KI215_RS11330 (JIR001_22880) - 2249370..2250716 (+) 1347 WP_212772834.1 AAA family ATPase -
  KI215_RS11335 (JIR001_22890) - 2250742..2251317 (-) 576 WP_212772835.1 5' nucleotidase, NT5C type -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 84989.47 Da        Isoelectric Point: 5.7659

>NTDB_id=86370 KI215_RS11310 WP_212772830.1 2244473..2246734(-) (recD2) [Polycladomyces abyssicola strain JIR-001]
MQQSGLDLWGEQYLKGAVIQEIYHNEENGFGVYLLKILEASELTDQSETVVVGHLFRPHPDEVLTCYGQWVQHPKYGRQF
QVQRVKKEWPQSEEAVVKYLSSGLFPGVGRKTAEKIVQHLGPAALEKISSNPDILADIPGVTPARARTIADNIRENQALE
QAMVYLYEFGIGPALALKIVQTYKEETMAVLRENPYRLIEDVEGVGFRRADEIARQAGVAQDSPARFQAAVLYAVKEAAY
TYGHVYVTPEQLLAEVKELLGEDASLFDDRARQLLDQMVEEERLVEAEGHFYLPSLYYAEHGFALRVRLLMEQEVPTFPV
QEIYRAIGELEEELGVAYADRQRDAMMKAVSSPLMILTGGPGTGKTTVIRGICHLFARLHECSLDPVVYEGTDRPYPIRL
VAPTGRAAKRMSEATGLPAMTIHRLLGWRGDFFERNADNPIEGSLLIVDEVSMMDIWLANQLFRAIPKGMQVVLVGDQDQ
LPSVGPGQVLQHLLQVEDIPRVELTEIFRQEEGSSIITLAHALKKGEVPADLVRPMPDRRFFPCTQEQVVDVVLQTYQQA
IKKGYTLFDVQVLAPMYKGPAGVNRINRAIQEAVNPKRDGVREITWGETVFRIGDKVLQLVNHPEHPIYNGDMGIIIAIE
ETAATDEPVCWVRFDRMEVPYKRNQLNQLSLAYACSVHKAQGSEFPIVIFPVVHAYRRMLRRNLIYTAVTRSKSYLILCG
EREAIRMGAQQTRGDERNSALVQLLRRWHQPPA

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=86370 KI215_RS11310 WP_212772830.1 2244473..2246734(-) (recD2) [Polycladomyces abyssicola strain JIR-001]
ATGCAACAGTCCGGGCTCGACCTTTGGGGAGAACAGTATCTCAAAGGTGCCGTCATCCAGGAGATCTACCACAATGAAGA
AAACGGCTTCGGGGTGTACCTGTTGAAAATCCTTGAAGCTTCGGAGCTGACGGACCAATCGGAAACCGTCGTGGTGGGCC
ATCTATTTCGCCCGCATCCGGATGAAGTGTTGACCTGTTACGGACAATGGGTGCAACACCCCAAATATGGGCGGCAGTTT
CAGGTTCAACGGGTGAAAAAGGAATGGCCCCAATCCGAAGAAGCCGTCGTCAAATATCTGTCCAGCGGACTTTTTCCCGG
TGTCGGCAGAAAAACGGCGGAAAAAATCGTCCAACATCTCGGGCCGGCGGCACTGGAGAAGATCAGCTCCAACCCGGATA
TTTTGGCGGATATCCCGGGGGTGACTCCGGCACGGGCCCGGACCATCGCCGACAACATCCGGGAGAACCAGGCCTTGGAA
CAGGCGATGGTGTATTTGTACGAGTTCGGGATCGGGCCCGCTTTGGCCTTGAAAATCGTACAGACATACAAAGAAGAGAC
AATGGCTGTCCTGCGTGAAAATCCGTACCGACTGATCGAAGATGTCGAAGGGGTCGGTTTTCGTCGTGCGGATGAAATCG
CCCGTCAAGCAGGAGTGGCACAGGATTCCCCAGCCCGATTTCAGGCGGCGGTATTGTACGCCGTCAAAGAAGCTGCATAC
ACTTACGGGCATGTCTATGTGACCCCGGAACAGCTGTTGGCGGAAGTGAAAGAGCTGCTCGGAGAAGACGCCTCTCTGTT
TGATGATCGTGCCCGTCAGTTGCTGGATCAAATGGTGGAAGAAGAACGGTTGGTGGAAGCGGAAGGACATTTCTATCTGC
CGTCTCTGTATTATGCGGAGCACGGCTTCGCTTTGCGTGTAAGGCTGTTGATGGAACAGGAAGTACCTACTTTCCCGGTA
CAGGAAATCTATCGGGCGATCGGTGAGTTGGAAGAGGAGTTGGGGGTGGCGTATGCCGACCGGCAACGGGACGCGATGAT
GAAAGCAGTTTCTTCCCCTTTGATGATTTTGACAGGGGGACCCGGCACCGGCAAGACCACTGTCATACGCGGGATTTGTC
ATCTGTTTGCCCGTTTGCACGAGTGCTCGCTTGATCCAGTCGTTTACGAAGGGACCGACCGGCCTTACCCGATCCGACTG
GTTGCACCCACGGGCAGAGCAGCGAAGCGAATGTCGGAAGCAACAGGCCTGCCGGCGATGACGATCCACCGACTGCTGGG
ATGGAGAGGAGACTTTTTTGAGCGAAATGCGGACAATCCCATCGAGGGATCGTTGCTGATCGTCGACGAGGTGTCGATGA
TGGATATCTGGTTGGCCAATCAATTGTTCCGGGCGATTCCCAAAGGCATGCAAGTGGTGTTGGTAGGGGATCAGGATCAA
CTCCCCTCTGTCGGTCCCGGCCAGGTACTTCAACATCTGTTGCAGGTAGAGGACATTCCGCGCGTGGAGCTGACGGAGAT
CTTCCGGCAGGAAGAAGGTTCTTCCATCATTACGTTAGCACACGCCTTGAAAAAGGGGGAAGTCCCGGCCGATCTGGTCC
GCCCCATGCCGGATCGACGTTTTTTTCCCTGTACCCAGGAACAAGTCGTCGATGTGGTGCTCCAAACGTACCAACAAGCC
ATTAAAAAGGGCTATACGCTGTTTGACGTGCAGGTATTGGCCCCGATGTACAAAGGTCCCGCCGGCGTCAATCGCATCAA
CAGGGCGATTCAGGAAGCGGTCAATCCCAAACGGGATGGCGTCCGGGAAATCACCTGGGGTGAAACCGTTTTCCGTATTG
GGGACAAAGTACTCCAGCTTGTCAACCACCCGGAACATCCCATTTACAACGGGGATATGGGTATCATCATCGCGATCGAG
GAAACGGCGGCGACTGACGAACCGGTCTGTTGGGTGCGGTTTGATCGAATGGAAGTGCCATACAAACGCAACCAACTGAA
TCAGCTTTCATTGGCCTACGCTTGTTCCGTCCACAAAGCACAAGGATCGGAGTTTCCCATCGTCATTTTCCCCGTGGTCC
ACGCCTACAGAAGAATGCTGAGGCGCAACCTGATCTACACGGCGGTAACACGCAGCAAATCGTATCTGATCTTGTGCGGA
GAACGGGAAGCCATTCGCATGGGTGCCCAGCAAACTCGGGGGGATGAGCGCAACAGCGCTCTGGTCCAATTGTTGCGACG
TTGGCATCAACCCCCAGCGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-643)

Helix-hairpin-helix domain (HHH_5)

(106-154)

AAA domain (AAA_30)

(338-532)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.408

100

0.485

Multiple sequence alignment