Detailed information NTG0863442

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: WAE38_RS03120
• Genome accession: NZ_CP147984
• Coordinates: 565576..566919 (+)
• Length: 447 a.a.
• NCBI ID: WP_062923946.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain H16SD2BY4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 560576..571919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAE38_RS03100 (WAE38_03100)	pntA	561086..562618 (-)	1533	WP_062923947.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-
WAE38_RS03105 (WAE38_03105)	-	562895..563947 (+)	1053	WP_005710531.1	rod shape-determining protein	-
WAE38_RS03110 (WAE38_03110)	mreC	564039..565088 (+)	1050	WP_005710533.1	rod shape-determining protein MreC	-
WAE38_RS03115 (WAE38_03115)	mreD	565088..565576 (+)	489	WP_005710534.1	rod shape-determining protein MreD	-
WAE38_RS03120 (WAE38_03120)	rarA	565576..566919 (+)	1344	WP_062923946.1	replication-associated recombination protein A	Machinery gene
WAE38_RS03125 (WAE38_03125)	-	566922..568385 (-)	1464	WP_338824616.1	porin family protein	-
WAE38_RS03130 (WAE38_03130)	-	568702..569325 (+)	624	WP_279378432.1	TonB family protein	-
WAE38_RS03135 (WAE38_03135)	-	569343..570011 (+)	669	WP_075604796.1	MotA/TolQ/ExbB proton channel family protein	-
WAE38_RS03140 (WAE38_03140)	-	570011..570421 (+)	411	WP_005710544.1	biopolymer transporter ExbD	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50138.03 Da
• Isoelectric Point: 6.3274

>NTDB_id=863442 WAE38_RS03120 WP_062923946.1 565576..566919(+) (rarA) [Glaesserella parasuis strain H16SD2BY4]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTNLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=863442 WAE38_RS03120 WP_062923946.1 565576..566919(+) (rarA) [Glaesserella parasuis strain H16SD2BY4]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTTTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGTAAGCCCCTACGCCGAGCGATTGAAGCAGGGCATAGCCACTCAATGATTT
TCTGGGGCCCACCAGGAACAGGCAAAACCACCCTTGCAGAAATTATCGCAAACGAACTTGATGCCGAAGTTGAACGCCTA
TCCGCCGTTACCAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCCGGCAGACGTAC
TTTACTCTTTGTTGATGAAGTTCATCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCACATTGAAGACGGCACCA
TTATTTTTATCGGAGCGACGACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTGTCACGGGCAAGAATTTACATT
CTCAAACCATTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGACAAAGAACGTGGACTAGGCAATGA
AAAACTCATTATTCAAGATGATGTGCTTCAACTGCTGGCGGATTATGTCAATGGTGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAGCAATTACCACAAGGAAAATTACTGGATAAAGCCTTGCTCACCGAAGTGTTAGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGACCCAAGGGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGTAACGCAC
CGACTAACTTAATGAAATCCTTAGGTTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGATACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.723	0.362