Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   CPY3401_RS07230 Genome accession   NZ_AP024599
Coordinates   1497982..1498245 (-) Length   87 a.a.
NCBI ID   WP_096423344.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3401     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492982..1503245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY3401_RS07215 (CPY3401_14430) - 1493956..1495296 (-) 1341 WP_221062452.1 COG3014 family protein -
  CPY3401_RS07225 (CPY3401_14440) comB4 1495617..1497980 (-) 2364 WP_221062453.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CPY3401_RS07230 (CPY3401_14450) comB3 1497982..1498245 (-) 264 WP_096423344.1 competence protein ComB Machinery gene
  CPY3401_RS07235 (CPY3401_14460) comB2 1498245..1498526 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CPY3401_RS07240 (CPY3401_14470) - 1498671..1499498 (-) 828 WP_108304347.1 DUF5718 family protein -
  CPY3401_RS07245 (CPY3401_14480) - 1499589..1500641 (-) 1053 WP_221062454.1 MnmA/TRMU family protein -
  CPY3401_RS07250 (CPY3401_14490) dnaG 1500638..1502317 (-) 1680 WP_221062455.1 DNA primase -
  CPY3401_RS07255 (CPY3401_14500) groES 1502593..1502949 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.09 Da        Isoelectric Point: 9.5507

>NTDB_id=86342 CPY3401_RS07230 WP_096423344.1 1497982..1498245(-) (comB3) [Helicobacter pylori strain 3401]
MVILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=86342 CPY3401_RS07230 WP_096423344.1 1497982..1498245(-) (comB3) [Helicobacter pylori strain 3401]
ATGGTTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment