Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   WAB15_RS15500 Genome accession   NZ_CP147982
Coordinates   3451220..3453427 (-) Length   735 a.a.
NCBI ID   WP_407286616.1    Uniprot ID   A0ABZ2QUP2
Organism   Streptomyces sp. BP-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3446220..3458427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS15480 (WAB15_15450) - 3446960..3447805 (+) 846 WP_399146811.1 TSUP family transporter -
  WAB15_RS15485 (WAB15_15455) - 3448035..3448661 (-) 627 WP_407286615.1 DedA family protein -
  WAB15_RS15490 (WAB15_15460) - 3448945..3449232 (+) 288 WP_399146813.1 heavy-metal-associated domain-containing protein -
  WAB15_RS15495 (WAB15_15465) - 3449754..3451043 (-) 1290 WP_399146814.1 citrate synthase -
  WAB15_RS15500 (WAB15_15470) recD/recD2/recDB 3451220..3453427 (-) 2208 WP_407286616.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WAB15_RS15505 (WAB15_15475) - 3453672..3454544 (-) 873 WP_407286617.1 sugar phosphate isomerase/epimerase family protein -
  WAB15_RS15510 (WAB15_15480) - 3454541..3455737 (-) 1197 WP_407286618.1 dihydrodipicolinate synthase family protein -
  WAB15_RS15515 (WAB15_15485) - 3455734..3456885 (-) 1152 WP_407286619.1 Gfo/Idh/MocA family protein -
  WAB15_RS15520 (WAB15_15490) - 3457047..3458075 (+) 1029 WP_399146819.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79326.92 Da        Isoelectric Point: 7.1389

>NTDB_id=863391 WAB15_RS15500 WP_407286616.1 3451220..3453427(-) (recD/recD2/recDB) [Streptomyces sp. BP-8]
MVNAAVVEGVLERITYANEESGYTVARVDTGRGANDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLVKGIGPVFADRITQHFGVDTLDIIEHEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVRNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLAELAADPEGVVREKVPGEDGVPVTAVYLVPFHRAEMSLAGRLTRLLRTDEDRMPAFRDVAW
DKALAWLARRTGADLAPEQQQAVRLALTRKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLAEP
GPVPAVRLTQIFRQAQESGVVTNAHRINSGVPPLTTGLADFFLFVEEDNEEAGRLAVDVAARRIPAKFGLDPRRDVQVLT
PMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTALDSDEQRLTVLTD
EDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKALGQAVRTVSA
GRRCTALAHRLAGAM

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=863391 WAB15_RS15500 WP_407286616.1 3451220..3453427(-) (recD/recD2/recDB) [Streptomyces sp. BP-8]
ATGGTCAACGCAGCCGTGGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAGCGGCTACACCGTCGCGCG
CGTCGACACCGGCCGCGGCGCGAACGATCTGCTGACCGTCGTCGGCGCGCTGCTCGGGGCGCAGGTGGGGGAGTCGCTGC
GGATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTCCTGCCCGCG
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGGTCAAGGGCATCGGCCCGGTCTTCGCCGACCGCATCACCCA
GCACTTCGGCGTGGACACCCTCGACATCATCGAACACGAGCCGAAGCGGCTCATCGAGGTGCCGGGCCTCGGCCCCAAGC
GCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTGGGGGTG
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCCTCGATCTCCGTCGTCCGCAACCAGCCCTACCGCCT
CGCCGCGGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGCATCGCCCAGTCCGTCGGCATCCCCCACGACAGCCCGG
ACCGCGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCAACTG
ATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGCCTGGCCGAGCTGGCCGCGGACCCGGA
GGGCGTGGTCCGCGAGAAGGTGCCCGGCGAGGACGGCGTCCCGGTCACCGCCGTCTATCTGGTGCCCTTCCACCGCGCCG
AGATGTCGCTGGCCGGCCGGCTGACACGGCTGCTGCGCACGGACGAGGACCGGATGCCGGCGTTCCGGGACGTCGCCTGG
GACAAGGCGTTGGCGTGGCTGGCGCGCCGTACGGGCGCCGACCTGGCCCCCGAGCAGCAGCAGGCGGTGCGCCTGGCGCT
GACGCGGAAGGTCGCGGTGCTCACGGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGGTCCGTGGTCGAGCTGGCCC
GCGCCAAGAAGGCGAAGGTGGTGCTGGCCGCGCCCACGGGCCGGGCCGCCAAGCGGCTCGCGGAGCTGACCGGCGCGGAG
GCCTCCACGGTCCACCGCCTCCTGGAGCTCAAGCCCGGCGGGGACGCCGCCTACGACGCCGACCGGCCGCTGGACGCCGA
TCTGGTGGTCGTCGACGAGGCGTCGATGCTGGATCTGCTGCTGGCCAACAAGCTCGTCAAGGCGGTGCCGCCGGGCGCCC
ATCTGCTGCTGGTGGGGGACGTCGACCAGCTGCCGTCGGTGGGCGCCGGCGAGGTGCTGCGGGACCTGCTGGCCGAGCCC
GGCCCGGTCCCCGCCGTCCGGCTGACTCAGATCTTCCGGCAGGCCCAGGAGTCCGGCGTGGTCACCAACGCCCACCGGAT
CAACTCCGGCGTCCCCCCGCTCACGACCGGACTGGCCGACTTCTTCCTGTTCGTGGAGGAGGACAATGAAGAGGCCGGAC
GGCTGGCCGTCGATGTCGCGGCCCGCCGGATCCCCGCCAAGTTCGGCCTGGACCCGCGCCGGGACGTCCAGGTGCTGACC
CCGATGCACCGCGGCCCGGCCGGTGCGGGCGCCCTGAACGGCCTGCTCCAGCAGGCCGTCACCCCCGCCCGCCCCGATCT
GCCCGAGCGCCGCTTCGGCGGCCGCGTCTTCCGCGTCGGGGACAAGGTCACCCAGATCAGGAACAACTATGAAAAGGGTC
GCAACGGCGTCTTCAACGGGACGGTGGGCGTGGTCACGGCCCTGGACTCCGACGAGCAGCGGCTGACGGTGCTCACCGAC
GAGGACGAGGAGGTCCCCTACGACTTCGACGAACTCGACGAACTCGCGCACGCCTATGCCGTGACGATCCATCGCTCGCA
GGGTAGTGAGTATCCAGCGGTGGTGATTCCGGTCACCACGAGTGCCTGGATGATGCTGCAGCGCAATTTGTTGTATACCG
CCGTGACCCGGGCGAAGCGTTTGGTGGTGCTGGTCGGCTCCCGGAAGGCCCTCGGGCAGGCCGTACGCACGGTATCCGCC
GGTCGGCGGTGTACGGCTCTGGCTCACCGGCTCGCCGGGGCGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-513)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.731

100

0.361