Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   WAB15_RS08415 Genome accession   NZ_CP147982
Coordinates   1865085..1866455 (-) Length   456 a.a.
NCBI ID   WP_399144104.1    Uniprot ID   A0ABZ2QHQ2
Organism   Streptomyces sp. BP-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860085..1871455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS08390 (WAB15_08360) - 1860266..1860610 (-) 345 WP_407285850.1 DUF6167 family protein -
  WAB15_RS08395 (WAB15_08365) - 1860619..1861053 (-) 435 WP_244943242.1 DUF948 domain-containing protein -
  WAB15_RS08400 (WAB15_08370) - 1861235..1863424 (+) 2190 WP_407285851.1 ATP-binding protein -
  WAB15_RS08405 (WAB15_08375) rpsD 1863450..1864061 (-) 612 WP_384429048.1 30S ribosomal protein S4 -
  WAB15_RS08410 (WAB15_08380) - 1864247..1865038 (+) 792 WP_407285852.1 DUF2470 domain-containing protein -
  WAB15_RS08415 (WAB15_08385) rarA 1865085..1866455 (-) 1371 WP_399144104.1 replication-associated recombination protein A Machinery gene
  WAB15_RS08420 (WAB15_08390) - 1866540..1867181 (-) 642 WP_399144106.1 vitamin K epoxide reductase family protein -
  WAB15_RS08425 (WAB15_08395) hisS 1867340..1868602 (-) 1263 WP_407285853.1 histidine--tRNA ligase -
  WAB15_RS08430 (WAB15_08400) - 1868613..1869326 (-) 714 WP_399144108.1 MBL fold metallo-hydrolase -
  WAB15_RS08435 (WAB15_08405) - 1869532..1870353 (+) 822 WP_399144109.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48513.83 Da        Isoelectric Point: 6.5857

>NTDB_id=863378 WAB15_RS08415 WP_399144104.1 1865085..1866455(-) (rarA) [Streptomyces sp. BP-8]
MEPDLFTAAAEDRQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVFLWGPPGIGKTTLAY
VVSQATNKRFVELSAITAGVKEVRAVIDGARRASGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLLRRALTDARGLAGAVTLPEDTEAHLLRIAGGDARRALTALEAGAGSALAKGEKE
ITLQTLEESVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPSAL
QTAVAAAQAVALIGFPEARITLSQATIALALAPKSNAAYTAIDAALADVRAGRAGAVPPHLRDSHYKGAQKLGHGQGYQY
PHDLPGGIAAQQYAPDEVHGRRYYEPTRHGAEARYADVAERVRARLRGAAGEGVAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=863378 WAB15_RS08415 WP_399144104.1 1865085..1866455(-) (rarA) [Streptomyces sp. BP-8]
GTGGAGCCCGACCTGTTCACCGCCGCCGCCGAAGACCGCCAGGAGAAGGACCCCGCGGGGTCTCCGCTCGCCGTGCGGAT
GCGTCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCATCTGCTCAAACCGGGCTCGCCGCTGCGCCGCCTGGTGGGGG
AGGGCAGCGGCGGGCCGGCGGGGCCGTCGTCGGTGTTTCTGTGGGGGCCGCCCGGCATCGGCAAGACGACCCTGGCGTAT
GTCGTCAGCCAGGCGACGAACAAGCGCTTCGTGGAGCTGTCGGCGATCACGGCCGGGGTCAAGGAGGTCCGTGCGGTCAT
CGACGGCGCCCGGCGCGCCTCCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CGCAGCAGGACTCCCTGCTGCCCGCCGTGGAGAACCGCTGGGTCACCCTGATCGCCGCGACGACCGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTGTCCCGGTCGCTGCTGCTGACGCTCGAACCGCTCACGGACGACGATCTGCGCGGGCTGCT
GCGGCGCGCGCTGACCGACGCGCGCGGCCTCGCCGGCGCGGTCACCCTCCCCGAGGACACCGAGGCGCATCTGCTGCGCA
TCGCCGGCGGCGACGCCCGGCGCGCGCTCACGGCCCTGGAGGCCGGCGCCGGATCCGCGCTGGCCAAGGGGGAGAAGGAG
ATCACCCTCCAGACCCTGGAGGAGTCCGTCGACCGCGCCGCGGTGAAGTACGACCGGGACGGCGATCAGCACTACGACGT
CGCCAGCGCGCTGATCAAGTCCATCCGCGGTTCGGACGTCGACGCCGCGCTGCACTACCTTGCGCGGATGATCGAGGCGG
GCGAGGACCCGCGGTTCATCGCCCGACGGCTGATGATCTCGGCGAGCGAGGACATCGGCCTGGCGGATCCGTCGGCCCTG
CAGACCGCGGTCGCCGCCGCCCAGGCGGTGGCGCTGATCGGTTTCCCCGAGGCCCGGATCACGCTGAGCCAGGCCACCAT
CGCGCTCGCCCTGGCGCCGAAGTCCAACGCCGCCTACACGGCCATCGACGCGGCGCTGGCGGACGTCCGGGCCGGCCGGG
CCGGTGCGGTCCCGCCCCATCTGCGCGACAGCCACTACAAGGGCGCCCAGAAGCTCGGCCACGGCCAGGGCTACCAGTAC
CCGCACGACCTGCCGGGCGGCATCGCGGCCCAGCAGTACGCGCCGGACGAGGTGCACGGCAGGCGGTACTACGAGCCCAC
CCGCCATGGCGCGGAGGCACGCTACGCCGACGTCGCCGAGCGGGTGCGGGCCCGCCTGCGCGGCGCGGCCGGCGAGGGCG
TCGCCGAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.688

94.079

0.43